Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1369.4 709 100.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1350.1 709 98.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1349.7 709 98.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1349.7 709 98.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1349.0 709 98.2
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1345.9 710 98.2
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1345.1 709 98.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1330.5 706 97.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1323.1 706 96.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1311.6 706 95.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1288.1 706 94.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1251.5 747 88.5
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1223.0 698 89.5
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1197.6 701 86.2
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1182.9 698 87.7
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1182.5 706 83.3
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1180.2 707 83.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1177.5 685 85.8
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 699 84.1
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 707 83.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 706 83.7
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 685 85.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 706 83.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 706 83.1
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 699 83.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 706 83.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 688 84.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 698 86.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 706 82.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 685 85.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 685 85.7
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 685 85.7
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 685 85.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 699 83.4
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 685 85.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 685 85.3
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 698 84.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 700 83.3
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 686 85.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 706 82.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 685 85.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 699 83.4
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 697 83.6
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 688 84.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 700 83.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1151.0 704 83.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 686 84.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 695 83.6
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 696 83.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 700 82.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 695 82.3
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 706 81.3
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 706 82.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 696 83.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 748 81.6
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 706 82.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 689 83.5
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 694 82.4
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 689 83.3
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 697 82.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 703 82.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 731 79.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1131.7 671 84.2
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 729 79.3
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 712 80.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 705 80.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 686 83.5
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 685 82.9
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 685 82.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 691 81.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 697 80.6
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 687 82.4
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 717 79.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 691 81.3
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 691 81.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 697 81.8
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 706 80.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 711 80.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 734 77.1
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 706 80.2
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 724 78.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1110.9 685 82.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 684 81.3
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 706 79.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 694 80.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 631 91.9
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1104.7 686 81.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 684 80.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 708 79.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 668 81.7
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 685 80.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1089.7 730 76.2
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1077.8 764 73.2
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.4e-311 1071.6 687 77.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.7e-311 1069.7 704 78.1
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.5e-308 1062.4 669 79.7
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 8.5e-307 1056.6 695 75.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.2e-306 1053.5 730 75.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-303 1045.4 666 80.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.1e-296 1020.8 706 73.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.6e-281 972.6 591 81.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.8e-280 969.1 689 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.8e-280 969.1 689 69.7
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.7e-280 967.2 631 78.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 5.5e-274 947.6 704 66.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.4e-269 932.9 691 67.9
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.6e-267 924.1 584 77.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.1e-266 923.3 692 66.9
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 2.3e-259 899.0 683 70.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.3e-258 895.2 554 80.9
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.0e-256 888.6 566 77.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.9e-253 879.4 589 75.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.3e-250 868.6 516 84.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.7e-246 855.1 675 67.4
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.3e-234 815.5 491 83.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.3e-227 792.7 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.5e-215 751.9 675 55.9
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 7.4e-202 708.0 441 77.8
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.2e-193 677.9 447 79.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 6.1e-156 555.4 328 81.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.4e-154 549.3 712 42.8
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.3e-142 511.1 791 37.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.8e-131 472.2 280 82.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.2e-124 451.4 270 80.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 9.9e-122 441.8 269 81.0
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 3.2e-120 436.8 368 61.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.2e-114 418.3 747 36.0
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.6e-110 402.5 236 83.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.6e-108 396.7 253 75.9
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.4e-107 394.0 233 81.1
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-103 380.9 259 76.8
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.2e-97 360.9 252 74.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-77 294.7 182 75.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 7.7e-74 282.7 215 67.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.2e-73 281.2 192 78.6
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.8e-70 269.2 148 84.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.4e-67 261.2 195 67.7
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-58 231.9 192 68.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-58 231.5 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.0e-54 217.2 167 67.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 5.7e-53 213.4 156 67.3
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 9.7e-53 212.6 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 9.7e-53 212.6 214 57.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.7e-50 204.5 489 29.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-45 189.1 119 81.5
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.7e-44 185.3 114 83.3
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.5e-40 171.4 104 80.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-39 169.1 111 80.2
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.0e-38 164.1 111 74.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 6.8e-38 163.3 125 72.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.7e-34 151.4 96 79.2
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-33 149.1 139 64.7
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-32 144.8 96 76.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-32 144.8 96 76.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.3e-24 117.5 99 62.6
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.5e-21 109.0 73 75.3
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.0e-21 108.6 63 81.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.9e-20 104.0 77 70.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 6.4e-20 103.6 59 84.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.1e-19 102.8 69 69.6
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-19 102.1 57 86.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.1e-19 100.9 69 73.9
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-17 94.7 103 50.5
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 6.2e-15 87.0 65 69.2
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.2e-11 74.7 60 63.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.2e-10 72.8 45 66.7
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.5e-08 65.9 40 80.0
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 2.5e-08 65.1 66 59.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.4e-06 59.3 48 60.4
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.1e-06 58.2 38 71.1


User provided reference genes

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