Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.9e-113 411.4 195 100.0
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.0e-60 235.7 183 65.6
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.5e-59 232.6 183 64.5
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 2.8e-58 229.2 183 63.9
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.4e-57 226.9 183 63.9
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 4.0e-57 225.3 183 62.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 4.0e-57 225.3 183 62.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 4.0e-57 225.3 183 62.3
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.8e-57 224.6 183 62.3
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 8.9e-57 224.2 183 62.3
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.2e-56 223.8 169 67.5
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.2e-56 223.8 169 67.5
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 8.6e-52 207.6 169 63.3
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.8e-50 202.6 183 59.0
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.3e-47 193.7 137 68.6
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 8.6e-44 181.0 183 54.6
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.5e-43 179.5 131 68.7
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 4.3e-43 178.7 169 55.6
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 5.6e-43 178.3 139 61.2
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 5.6e-43 178.3 132 66.7
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.6e-42 176.8 140 63.6
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.6e-42 176.8 139 61.2
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.6e-42 176.8 139 61.9
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.6e-42 176.8 137 63.5
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.8e-42 176.0 139 61.9
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.8e-42 176.0 139 63.3
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 6.2e-42 174.9 170 52.9
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.4e-41 173.7 137 62.0
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.8e-41 173.3 139 63.3
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.8e-41 173.3 139 60.4
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.8e-41 173.3 137 63.5
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 3.1e-41 172.6 189 49.7
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 6.8e-41 171.4 139 61.2
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 8.9e-41 171.0 137 62.8
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 8.9e-41 171.0 137 64.2
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.2e-40 170.6 139 59.7
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.0e-40 169.9 139 58.3
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 3.4e-40 169.1 134 63.4
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 4.4e-40 168.7 142 61.3
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.8e-40 168.3 139 61.9
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 7.6e-40 167.9 137 62.0
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-39 167.2 137 62.0
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.3e-39 167.2 137 62.0
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.7e-39 166.8 137 62.0
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 2.2e-39 166.4 137 59.1
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.2e-39 166.4 137 58.4
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 2.2e-39 166.4 138 60.1
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.9e-39 166.0 137 61.3
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 4.9e-39 165.2 146 58.9
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 8.4e-39 164.5 136 58.8
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.4e-38 163.7 137 61.3
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.9e-38 163.3 139 59.7
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.9e-38 163.3 139 59.7
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.4e-38 162.9 139 56.8
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 3.2e-38 162.5 141 58.9
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 3.2e-38 162.5 138 58.7
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 4.1e-38 162.2 139 57.6
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 4.1e-38 162.2 137 57.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.4e-38 161.8 137 59.9
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 7.1e-38 161.4 171 50.9
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.1e-38 161.4 138 58.0
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 7.1e-38 161.4 137 59.9
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 9.2e-38 161.0 137 56.2
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.6e-37 160.2 137 56.2
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.6e-37 160.2 171 49.7
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.1e-37 159.8 137 56.2
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 2.7e-37 159.5 125 62.4
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.7e-37 159.5 140 56.4
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.5e-37 159.1 142 58.5
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 6.0e-37 158.3 140 55.7
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 7.8e-37 157.9 139 55.4
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.7e-36 156.8 140 56.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 3.9e-36 155.6 139 54.7
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 5.1e-36 155.2 137 53.3
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 2.5e-35 152.9 140 56.4
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 4.3e-35 152.1 132 56.1
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.3e-35 151.4 183 43.2
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 9.6e-35 151.0 139 55.4
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.6e-34 150.2 137 52.6
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 4.7e-34 148.7 120 63.3
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 6.2e-34 148.3 133 59.4
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.1e-33 147.5 144 51.4
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.4e-33 147.1 165 47.9
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 2.4e-33 146.4 132 53.8
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.0e-33 145.6 139 51.8
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 5.2e-33 145.2 133 54.9
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 6.9e-33 144.8 116 61.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 9.0e-33 144.4 140 52.1
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 9.0e-33 144.4 139 51.8
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.3e-31 140.6 134 54.5
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.9e-31 139.4 142 48.6
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 7.1e-30 134.8 140 50.7
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.2e-29 134.0 139 48.2
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.7e-29 132.9 118 61.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.7e-29 132.9 144 49.3
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 7.8e-29 131.3 139 48.9
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.3e-28 130.6 113 59.3
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.9e-27 126.7 92 67.4
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 2.1e-26 123.2 137 47.4
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 3.6e-26 122.5 136 47.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 6.2e-26 121.7 89 68.5
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 5.8e-24 115.2 117 56.4
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.8e-24 115.2 98 57.1
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 7.6e-24 114.8 132 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 7.6e-24 114.8 138 45.7
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.7e-23 113.6 138 40.6
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.7e-23 113.6 97 61.9
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.1e-22 110.9 125 49.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.1e-22 110.9 147 42.9
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 4.2e-22 109.0 156 44.2
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.0e-20 104.4 133 42.1
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 8.1e-18 94.7 154 39.0
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 2.2e-15 86.7 59 72.9
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 2.3e-12 76.6 120 34.2
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 1.0e-07 61.2 72 48.6
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 1.9e-06 57.0 104 35.6


User provided reference genes

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