Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 0.0e+00 1453.7 760 100.0
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1260.0 710 90.1
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1256.1 769 83.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1256.1 769 83.2
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1255.4 763 85.8
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1249.6 761 83.7
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1243.8 768 82.6
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1238.4 763 83.1
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 0.0e+00 1235.7 760 84.3
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1229.9 760 84.3
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 0.0e+00 1226.1 760 84.1
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 0.0e+00 1209.5 760 83.6
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 0.0e+00 1208.7 766 83.2
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 0.0e+00 1205.7 764 81.5
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 0.0e+00 1201.8 737 82.8
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 0.0e+00 1196.8 618 92.4
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 0.0e+00 1175.6 766 79.4
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 0.0e+00 1168.7 775 79.1
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1110.1 742 75.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 0.0e+00 1090.1 632 82.4
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.4e-299 1032.7 627 77.4
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.6e-298 1028.5 626 77.2
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 7.7e-298 1026.9 626 77.0
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.9e-296 1022.3 626 76.4
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 5.5e-296 1020.8 627 76.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 2.1e-295 1018.8 627 76.4
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.6e-290 1001.9 620 74.8
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.5e-290 1001.5 625 75.0
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 7.7e-290 1000.3 756 65.6
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.9e-288 995.7 624 74.8
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 5.5e-288 994.2 631 75.4
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 5.5e-288 994.2 618 75.1
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 6.1e-287 990.7 627 73.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.0e-286 989.9 750 67.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.8e-286 989.2 670 76.3
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.5e-285 983.8 626 72.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 7.0e-283 977.2 748 67.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 9.1e-283 976.9 626 73.5
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.6e-282 976.1 760 63.8
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 4.5e-282 974.5 622 72.8
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 7.7e-282 973.8 620 73.2
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.3e-281 973.0 626 73.3
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.9e-281 971.8 626 73.5
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 6.5e-281 970.7 760 64.2
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.1e-280 969.9 626 72.5
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.1e-280 969.9 626 72.2
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.5e-280 968.8 627 72.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 2.5e-280 968.8 678 70.4
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.2e-280 968.4 676 70.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 7.2e-280 967.2 677 68.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 9.4e-280 966.8 675 69.2
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.4e-280 966.8 692 67.1
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.0e-278 963.4 630 71.7
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.0e-278 963.4 676 68.8
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.6e-277 958.7 628 71.7
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.7e-276 956.1 627 72.1
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 8.3e-276 953.7 763 62.5
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.4e-275 953.0 618 72.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.4e-275 952.2 625 71.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.1e-275 951.8 622 71.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 2.0e-274 949.1 618 72.2
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 7.7e-274 947.2 761 62.5
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.9e-273 945.3 610 73.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.1e-272 943.3 627 72.4
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.5e-272 942.2 623 71.4
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.2e-271 939.9 719 65.2
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 8.0e-271 937.2 719 65.1
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.0e-270 936.8 772 63.1
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.3e-270 935.6 552 82.4
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.3e-270 935.6 667 67.8
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 5.2e-270 934.5 640 69.8
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 6.8e-270 934.1 626 70.3
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 4.9e-268 927.9 627 70.2
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.4e-268 927.5 694 64.8
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 8.3e-268 927.2 666 66.1
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 9.2e-267 923.7 675 66.7
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.0e-265 918.7 769 60.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.6e-263 911.8 618 69.7
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 6.2e-263 911.0 657 67.6
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 5.4e-259 897.9 627 69.1
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 7.8e-258 894.0 630 68.4
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.3e-257 893.3 718 62.1
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.0e-257 891.3 720 61.8
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.9e-256 889.4 658 65.5
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.9e-256 889.4 623 68.5
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.6e-255 886.3 643 65.2
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.8e-255 885.6 626 65.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 5.2e-254 881.3 626 67.1
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 5.8e-253 877.9 567 72.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.3e-249 866.7 606 67.8
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 9.5e-248 860.5 572 71.0
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.1e-246 857.1 622 65.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 5.2e-246 854.7 622 65.1
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.4e-243 846.7 542 72.9
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 6.0e-242 841.3 630 64.0
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.7e-241 839.7 626 66.0
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.3e-241 839.3 541 72.5
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 2.5e-240 835.9 709 60.1
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 8.1e-239 830.9 615 65.9
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.8e-238 827.8 771 56.7
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.4e-237 825.5 768 56.8
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.1e-235 820.5 703 61.0
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.0e-233 813.9 628 63.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.3e-233 812.8 627 60.3
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.7e-226 789.3 633 62.7
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 6.6e-225 784.6 628 60.7
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.7e-225 784.3 647 58.6
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.9e-222 774.6 735 56.2
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.5e-221 773.5 628 61.6
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 6.2e-215 751.5 622 58.2
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 8.1e-215 751.1 652 56.4
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 3.0e-209 732.6 665 56.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.8e-204 715.7 760 51.4
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 6.9e-198 694.9 586 59.6
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 3.8e-196 689.1 625 58.1
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.3e-193 679.9 539 60.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 9.1e-190 667.9 568 60.2
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-189 666.8 526 62.5
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 4.5e-189 665.6 551 66.1
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 7.7e-189 664.8 430 71.6
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.2e-187 659.4 627 54.5
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.8e-183 646.4 626 54.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 8.2e-183 644.8 435 74.0
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 3.8e-180 636.0 433 70.2
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 4.8e-175 619.0 430 67.0
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.8e-174 617.1 482 63.1
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.2e-173 614.4 431 67.1
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.1e-171 607.8 658 48.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.8e-161 572.0 421 61.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-160 570.5 421 62.0
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.0e-156 558.1 716 42.3
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.9e-149 532.3 318 80.8
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 3.5e-141 506.5 636 42.9
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.9e-135 486.9 427 56.2
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.2e-134 483.4 357 64.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.6e-133 481.1 662 41.4
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 8.1e-130 468.8 611 40.3
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.6e-107 392.9 432 50.0
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.1e-91 342.0 224 71.4
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 2.1e-90 337.8 199 82.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.3e-82 312.0 195 75.9
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 5.3e-81 306.6 191 76.4
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 3.8e-79 300.4 186 75.8
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.1e-75 288.9 172 77.9
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.1e-73 280.4 188 71.3
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.2e-72 278.9 188 70.2
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 7.2e-70 269.6 158 79.1
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 7.7e-64 249.6 188 63.3
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.0e-63 249.2 151 78.8
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.2e-60 236.9 137 77.4
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.8e-58 230.3 171 65.5
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 6.5e-55 219.9 262 53.8
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 9.8e-51 206.1 113 88.5
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.4e-49 202.2 113 85.0
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.7e-45 187.2 104 81.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 2.8e-37 161.4 79 94.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.8e-36 158.7 110 66.4
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.8e-36 158.7 84 84.5
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.0e-36 157.9 104 72.1
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 5.4e-25 120.6 76 69.7
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.0e-23 116.3 72 73.6
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.0e-23 116.3 85 64.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.9e-22 112.1 153 39.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 7.5e-19 100.1 70 68.6
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.7e-13 80.9 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.4e-09 68.6 44 72.7
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 9.2e-09 66.6 50 64.0
DCAR_012614 Daucus carota HOM05D001610 ORTHO05D001585 3.3e-06 58.2 324 24.1
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.3e-06 57.8 43 65.1


User provided reference genes

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