Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.9e-139 499.2 257 100.0
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.0e-124 450.3 257 91.1
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 8.8e-121 437.2 254 89.8
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 3.3e-120 435.3 254 88.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 3.3e-120 435.3 254 88.6
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-119 433.0 254 87.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-119 432.2 254 87.4
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.8e-118 429.5 254 87.0
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.2e-111 406.0 259 81.9
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.4e-110 403.3 259 83.0
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.0e-109 399.4 259 80.3
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.9e-107 392.9 258 82.2
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.9e-99 366.3 255 76.5
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.0e-84 315.1 250 67.2
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.0e-84 315.1 250 66.4
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.9e-83 313.2 256 66.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.5e-83 310.8 256 66.4
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-82 310.5 260 66.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-81 306.6 259 64.1
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.8e-81 306.6 260 62.3
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.3e-81 306.2 259 64.5
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 4.0e-81 305.4 251 64.1
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.2e-81 305.1 250 65.2
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 8.9e-81 304.3 259 64.1
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.9e-81 304.3 257 64.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.5e-80 303.5 256 61.7
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.0e-80 303.1 259 63.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.6e-80 302.8 259 66.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 9.8e-80 300.8 258 63.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.7e-79 300.1 256 64.5
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-79 299.3 254 63.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 4.9e-79 298.5 252 63.1
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-76 289.7 259 59.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.9e-76 288.9 254 62.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 5.1e-76 288.5 246 64.2
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.1e-76 288.5 201 72.1
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.6e-76 288.1 201 72.1
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 8.6e-76 287.7 254 63.8
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.5e-75 287.0 260 61.5
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.5e-75 287.0 232 65.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-75 286.6 263 61.2
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 4.3e-75 285.4 249 61.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-75 285.4 211 65.4
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.2e-74 283.9 200 72.5
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 3.6e-74 282.3 256 60.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 6.2e-74 281.6 257 61.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 6.2e-74 281.6 246 63.0
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.1e-74 281.2 242 62.0
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 8.1e-74 281.2 206 69.4
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.8e-73 280.0 245 62.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.8e-73 280.0 245 62.0
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.8e-73 280.0 259 61.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 3.1e-73 279.3 252 62.7
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.0e-73 278.9 180 75.6
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 4.0e-73 278.9 234 63.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.2e-73 278.5 252 60.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 5.2e-73 278.5 201 71.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 6.8e-73 278.1 244 61.9
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 8.9e-73 277.7 245 62.0
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 8.9e-73 277.7 260 61.2
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 1.5e-72 276.9 256 60.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.5e-72 276.9 246 64.2
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.5e-72 276.9 261 61.7
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.0e-72 276.6 201 68.2
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.6e-72 276.2 187 71.7
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.4e-72 275.4 246 61.8
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.4e-72 275.4 262 59.9
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.8e-72 275.0 201 69.2
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.8e-72 275.0 245 60.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.6e-72 274.6 180 75.0
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 7.6e-72 274.6 247 60.3
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 9.9e-72 274.2 180 74.4
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 9.9e-72 274.2 201 68.2
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 9.9e-72 274.2 200 68.0
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.3e-71 273.9 242 62.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.3e-71 273.9 254 59.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 259 60.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 240 61.7
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.7e-71 273.5 243 60.1
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.7e-71 273.5 205 67.8
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.7e-71 273.5 199 69.3
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.7e-71 273.5 247 64.8
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.2e-71 273.1 250 62.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-71 273.1 262 57.6
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 2.2e-71 273.1 252 59.5
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 2.9e-71 272.7 241 60.2
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.9e-71 272.7 252 62.7
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.8e-71 272.3 252 59.1
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 6.4e-71 271.6 183 72.1
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 6.4e-71 271.6 256 61.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 6.4e-71 271.6 259 57.5
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.4e-71 271.2 258 60.5
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.1e-70 270.8 244 61.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.1e-70 270.8 198 68.2
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.4e-70 270.4 254 58.7
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.4e-70 270.4 255 58.0
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.4e-70 270.4 242 59.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.9e-70 270.0 256 57.8
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.9e-70 270.0 183 72.7
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.4e-70 269.6 250 59.2
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.1e-70 268.9 262 59.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 9.2e-70 267.7 260 59.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.6e-69 266.9 180 71.7
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 2.7e-69 266.2 242 58.3
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 3.5e-69 265.8 254 56.3
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 3.5e-69 265.8 257 56.8
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 7.8e-69 264.6 263 57.0
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.0e-68 264.2 201 65.2
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.0e-68 264.2 255 60.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.3e-68 263.8 181 72.4
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.3e-68 263.8 183 70.5
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.7e-68 263.5 219 60.7
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.9e-68 262.3 252 58.7
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.1e-67 260.8 245 60.0
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.6e-67 258.5 256 57.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-66 257.3 228 60.1
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.8e-65 253.4 243 57.6
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-62 244.2 244 57.4
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.4e-62 243.0 251 56.6
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 3.2e-62 242.7 259 56.8
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 3.2e-62 242.7 228 57.0
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.7e-61 239.6 196 61.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.6e-61 238.8 161 72.7
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.3e-60 236.5 176 65.3
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 6.6e-60 235.0 172 69.2
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 6.6e-60 235.0 207 61.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 8.7e-60 234.6 214 59.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.9e-59 233.4 180 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 5.6e-59 231.9 252 50.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 7.3e-59 231.5 188 63.3
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 8.1e-58 228.0 252 50.8
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.4e-57 226.5 220 56.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 4.0e-57 225.7 191 58.6
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.7e-53 213.0 146 69.2
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.7e-50 202.6 222 51.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 4.0e-49 199.1 132 72.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.3e-49 198.7 153 64.7
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.6e-48 196.4 180 58.9
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 5.5e-46 188.7 234 50.9
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.5e-46 188.7 120 79.2
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.6e-45 187.2 211 49.8
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 1.9e-43 180.3 119 72.3
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 5.6e-43 178.7 214 45.8
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.1e-42 176.8 220 47.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.2e-42 174.9 204 52.0
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.3e-39 167.5 127 69.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.9e-39 166.4 183 52.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 4.2e-38 162.5 190 50.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.6e-37 160.6 181 50.8
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 5.1e-36 155.6 183 51.4
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.7e-36 155.2 157 50.3
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.9e-35 153.7 136 60.3
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-34 149.8 97 73.2
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 6.3e-34 148.7 169 52.1
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 6.1e-29 132.1 78 78.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.0e-28 131.3 78 78.2
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.4e-25 120.2 78 75.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.4e-24 116.3 116 56.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.6e-19 100.1 78 64.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.6e-19 100.1 71 64.8
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 4.4e-19 99.4 103 47.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.9e-17 92.0 88 54.5
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 5.9e-16 89.0 136 46.3
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.4e-12 77.8 190 33.2
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 2.3e-12 77.0 49 79.6
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-11 74.3 50 70.0
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 9.7e-11 71.6 46 71.7
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.3e-09 65.9 135 36.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.0e-08 63.9 55 56.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.3e-07 61.2 138 32.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.3e-07 61.2 131 34.4
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 8.5e-07 58.5 62 50.0
BolC2t10115H Brassica oleracea HOM05D034141 ORTHO05D033148 9.4e-06 55.1 35 77.1
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 9.4e-06 55.1 109 36.7
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 9.4e-06 55.1 150 31.3


User provided reference genes

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