Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.4e-122 443.0 220 100.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 7.8e-118 427.2 220 95.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.1e-114 415.2 220 93.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 5.2e-114 414.5 220 93.2
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 3.5e-110 401.7 220 88.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.3e-109 399.1 220 88.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 3.3e-108 395.2 221 86.9
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 3.3e-108 395.2 221 86.9
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 9.6e-108 393.7 221 86.9
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.5e-105 386.3 221 84.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 9.9e-105 383.6 220 83.6
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 6.4e-104 380.9 216 86.1
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.3e-101 373.2 216 83.3
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.3e-101 372.5 220 85.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.0e-98 361.7 218 80.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.2e-96 355.9 220 76.8
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 7.1e-95 350.9 216 78.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 3.5e-94 348.6 218 75.7
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 6.0e-94 347.8 222 74.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.9e-93 345.1 218 75.7
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.1e-93 344.7 216 76.4
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.7e-93 344.0 240 71.2
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.7e-93 344.0 215 74.9
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.7e-93 344.0 215 74.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.5e-92 343.2 217 74.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.5e-92 342.4 218 74.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 4.3e-92 341.7 222 74.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.3e-91 340.1 220 75.5
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.6e-91 339.7 218 74.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 2.1e-91 339.3 215 72.6
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 6.2e-91 337.8 220 77.3
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 6.2e-91 337.8 218 73.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 8.1e-91 337.4 220 74.5
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.8e-90 336.3 218 72.0
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.8e-90 336.3 218 72.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.8e-90 336.3 221 74.2
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.4e-90 335.9 218 72.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.4e-90 335.9 215 71.6
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.1e-90 335.5 218 71.6
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.1e-90 335.5 215 72.1
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.2e-89 333.6 218 73.4
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.5e-89 333.2 219 71.2
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-89 333.2 218 72.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.0e-89 332.8 218 71.6
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 5.8e-89 331.3 218 70.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 5.8e-89 331.3 218 71.6
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 5.8e-89 331.3 220 71.4
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 9.9e-89 330.5 218 70.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.3e-88 330.1 219 70.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.2e-88 329.3 238 70.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 8.4e-88 327.4 215 70.7
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-87 325.1 217 71.0
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.3e-87 323.9 217 70.5
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.2e-86 323.6 255 63.9
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.2e-86 323.6 255 63.9
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-86 323.6 217 70.5
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.1e-86 322.8 220 69.5
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.0e-86 321.2 219 66.7
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.0e-85 320.5 213 70.9
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.0e-85 320.5 250 65.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.3e-85 320.1 219 72.6
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.0e-85 318.9 221 68.3
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 5.1e-85 318.2 218 67.0
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 8.7e-85 317.4 215 71.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.3e-84 315.1 221 68.8
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-83 313.5 220 69.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.3e-83 313.5 218 67.0
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.6e-83 313.2 218 67.0
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 2.8e-83 312.4 217 69.1
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.7e-83 312.0 215 67.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.4e-82 310.1 220 65.5
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.4e-82 310.1 214 64.5
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.4e-82 309.3 218 65.6
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-81 307.0 220 64.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.6e-81 304.3 216 66.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.0e-80 303.9 215 67.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 3.2e-79 298.9 260 56.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.1e-78 296.2 215 63.3
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.1e-78 296.2 213 64.8
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 2.1e-78 296.2 217 64.5
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-78 295.4 219 60.3
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.6e-78 295.0 210 68.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 6.0e-78 294.7 220 60.9
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 6.0e-78 294.7 245 58.8
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.0e-77 293.9 215 62.8
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.3e-77 292.7 220 63.2
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.3e-77 292.7 220 63.2
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.3e-77 292.7 220 63.2
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.0e-77 292.4 215 63.7
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 5.1e-77 291.6 215 62.3
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 8.7e-77 290.8 216 63.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 7.4e-76 287.7 215 59.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 7.4e-76 287.7 217 61.3
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 9.6e-76 287.3 217 61.8
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.1e-75 286.2 215 61.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.7e-75 285.4 215 60.0
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.4e-74 283.5 217 60.4
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.8e-74 283.1 215 60.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.1e-74 282.3 197 66.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.7e-72 276.6 202 62.9
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.1e-70 269.6 178 69.7
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-70 268.9 216 58.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.9e-70 267.7 215 59.1
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.5e-68 262.7 213 61.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.4e-66 256.9 225 52.4
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.1e-66 255.8 225 52.4
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 5.9e-65 251.5 169 74.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.1e-62 243.0 170 68.8
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-61 240.7 215 54.9
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 6.7e-61 238.0 159 71.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-60 236.1 185 61.1
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 4.4e-60 235.3 141 77.3
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-59 233.8 182 60.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 4.8e-59 231.9 213 47.4
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.2e-59 231.1 190 61.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 5.3e-58 228.4 219 54.8
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.1e-58 227.6 221 52.0
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 3.4e-57 225.7 210 47.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.5e-57 225.3 141 75.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.9e-57 224.9 168 63.7
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 7.7e-57 224.6 160 66.9
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 7.7e-57 224.6 160 66.9
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 3.8e-56 222.2 142 73.9
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-55 220.7 214 51.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 3.2e-55 219.2 211 50.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.6e-54 215.7 212 45.3
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.9e-54 214.5 169 58.6
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.2e-51 206.5 203 48.3
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 8.2e-51 204.5 165 61.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 7.0e-50 201.4 159 59.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 7.0e-50 201.4 168 58.9
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.3e-48 197.2 220 39.5
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 6.5e-48 194.9 191 47.1
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-47 193.7 143 62.9
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 3.3e-44 182.6 149 61.1
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.2e-43 179.9 122 71.3
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-43 179.1 166 54.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.1e-42 175.6 133 63.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.3e-42 175.3 203 44.3
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.1e-38 161.8 124 62.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.4e-37 160.6 128 65.6
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.2e-36 157.5 160 51.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-36 157.1 133 58.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 5.7e-36 155.2 123 62.6
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.1e-34 147.9 134 54.5
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-32 143.7 117 60.7
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-28 129.8 101 62.4
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.0e-24 117.9 71 85.9
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-22 110.9 87 63.2
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-22 110.2 143 42.0
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.4e-19 98.6 78 60.3
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.4e-18 96.7 63 65.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 7.0e-18 95.1 66 60.6
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.6e-15 85.5 82 57.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-14 83.6 74 50.0
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.4e-13 80.9 52 61.5
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.8e-13 78.6 54 77.8
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.8e-13 78.6 54 77.8
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 7.5e-12 75.1 53 75.5
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.3e-11 71.6 106 39.6
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 5.4e-10 68.9 162 28.4
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 2.0e-09 67.0 97 40.2


User provided reference genes

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