Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.9e-227 790.4 433 100.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.5e-170 602.1 428 82.5
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 4.6e-154 548.5 451 71.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.0e-153 547.4 429 74.6
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.9e-150 534.3 460 69.8
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 8.3e-148 527.7 455 70.5
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.1e-143 513.1 455 69.5
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 4.6e-106 389.0 432 58.1
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.3e-104 382.9 431 58.0
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 7.7e-101 371.7 430 58.8
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.0e-100 371.3 429 57.3
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 5.0e-100 369.0 434 56.5
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 5.5e-99 365.5 431 56.8
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.6e-98 362.5 435 56.8
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.8e-97 360.5 443 54.6
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-97 360.5 443 54.6
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.8e-97 360.5 443 54.6
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.0e-96 357.1 428 56.1
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.1e-94 351.3 447 53.9
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 5.0e-92 342.4 438 54.3
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 8.5e-92 341.7 434 55.1
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-91 341.3 434 55.1
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 6.1e-90 335.5 444 50.9
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 7.9e-90 335.1 441 50.8
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.0e-88 330.5 449 51.0
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 7.4e-88 328.6 428 52.8
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 3.7e-87 326.2 428 53.0
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 8.2e-87 325.1 425 53.9
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-86 324.7 425 53.4
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.4e-86 324.3 460 49.6
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 4.1e-86 322.8 454 48.2
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.5e-85 320.9 437 51.9
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 4.5e-85 319.3 431 49.4
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.5e-85 319.3 431 50.6
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.9e-85 318.9 441 49.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.7e-85 318.5 439 49.9
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.0e-84 318.2 431 54.8
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.0e-84 318.2 431 54.8
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.0e-84 318.2 434 50.5
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.9e-84 316.6 431 54.5
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.5e-84 315.5 441 50.6
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 8.5e-84 315.1 441 49.4
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 8.5e-84 315.1 441 49.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.9e-83 313.9 434 48.8
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.5e-83 313.5 430 50.5
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.5e-83 313.5 432 49.3
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 7.2e-83 312.0 462 47.6
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 9.4e-83 311.6 442 48.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 9.4e-83 311.6 439 49.2
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 9.4e-83 311.6 439 49.2
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.6e-82 309.7 443 48.3
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 6.1e-82 308.9 447 48.5
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.8e-81 307.4 472 45.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.8e-81 307.4 441 50.1
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 6.7e-81 305.4 447 47.9
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 6.7e-81 305.4 438 49.1
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 8.8e-81 305.1 466 46.6
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.1e-80 304.7 446 48.0
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.5e-80 304.3 433 49.7
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.0e-80 303.9 439 50.1
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.0e-80 303.9 432 48.8
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.6e-80 303.5 426 50.2
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.7e-80 302.4 430 50.5
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 7.4e-80 302.0 433 49.0
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.8e-79 300.1 432 47.5
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.8e-79 300.1 421 50.6
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.7e-79 299.7 434 47.7
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.7e-79 299.7 442 47.5
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 4.8e-79 299.3 442 47.5
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.4e-78 297.7 442 47.7
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.4e-78 297.0 433 49.2
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 5.3e-78 295.8 496 44.8
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.2e-77 294.7 452 48.2
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.2e-77 294.7 470 46.6
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.6e-77 294.3 457 46.6
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.6e-77 294.3 533 43.3
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.5e-77 292.7 435 48.0
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.0e-76 291.6 459 46.2
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.2e-76 290.4 434 47.0
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.9e-76 290.0 433 47.6
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.5e-75 287.0 451 46.6
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 4.2e-75 286.2 437 45.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.2e-74 284.6 431 49.4
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.6e-74 283.1 503 44.3
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 6.1e-74 282.3 457 45.3
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.0e-73 281.6 421 46.3
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.0e-73 281.6 450 44.7
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.4e-73 281.2 443 47.4
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 8.8e-73 278.5 441 48.8
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.2e-72 278.1 437 48.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.2e-72 278.1 467 45.2
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.2e-72 278.1 458 47.2
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.6e-72 276.9 476 43.5
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 4.4e-72 276.2 424 46.9
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.7e-72 275.8 443 45.6
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 9.8e-72 275.0 432 48.8
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 9.8e-72 275.0 440 48.0
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 2.2e-71 273.9 428 45.8
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.2e-71 273.9 462 45.5
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.8e-71 273.5 469 44.3
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 3.7e-71 273.1 501 42.5
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 4.8e-71 272.7 497 42.9
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.1e-70 271.6 435 48.3
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.4e-70 270.4 469 45.2
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.4e-70 270.4 449 45.7
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.1e-70 270.0 467 44.5
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 4.1e-70 269.6 483 42.7
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 5.4e-70 269.2 426 45.5
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 7.0e-70 268.9 435 45.7
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 7.0e-70 268.9 439 46.2
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.2e-69 268.1 439 44.6
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 2.0e-69 267.3 466 43.6
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 7.7e-69 265.4 426 46.5
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.0e-68 265.0 438 45.4
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.8e-68 263.1 458 43.2
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 8.5e-68 261.9 434 45.6
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.5e-67 261.2 432 47.9
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.9e-67 260.8 427 45.0
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 1.9e-67 260.8 430 45.3
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.5e-67 260.4 427 45.0
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 3.2e-67 260.0 448 43.5
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 4.2e-67 259.6 438 45.9
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 4.2e-67 259.6 482 41.9
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.2e-67 259.6 446 43.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 3.6e-66 256.5 473 43.3
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 3.6e-66 256.5 481 41.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 6.8e-65 252.3 439 44.6
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.2e-64 251.5 468 42.9
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 2.0e-64 250.8 440 43.6
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 3.4e-64 250.0 372 44.6
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.7e-64 249.2 421 45.1
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-63 246.5 424 44.8
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.3e-63 245.7 449 43.7
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.4e-62 244.6 456 41.7
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 7.0e-62 242.3 439 43.3
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 2.7e-61 240.4 446 43.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 3.5e-61 240.0 224 61.6
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 8.6e-60 235.3 470 41.5
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 8.6e-60 235.3 450 41.6
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 7.2e-59 232.3 223 61.4
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 2.8e-58 230.3 432 41.7
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.0e-56 224.2 424 41.0
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.9e-55 220.3 453 41.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.4e-54 218.0 465 40.0
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.0e-49 199.9 447 40.5
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 4.4e-48 196.4 157 69.4
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.3e-47 194.9 481 36.4
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.2e-47 194.1 459 36.8
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.2e-45 188.3 423 38.1
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.1e-41 175.3 345 42.0
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 2.6e-40 170.6 444 35.8
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.1e-38 165.2 356 39.9
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 7.1e-38 162.5 444 37.8
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 9.2e-30 135.6 437 34.6
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.1e-29 134.4 450 32.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.3e-28 131.7 349 37.2
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.1e-28 129.8 86 74.4
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 2.8e-26 124.0 85 77.6
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.4e-25 121.7 155 47.1
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-23 115.2 420 32.9
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 4.2e-22 110.2 128 56.2
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.9e-19 101.3 71 76.1
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-18 98.2 128 48.4
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-18 98.2 128 48.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.8e-18 97.4 131 51.1
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 2.8e-18 97.4 131 51.1
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 5.4e-14 83.2 112 50.9
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.5e-11 75.1 110 46.4
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 4.3e-11 73.6 483 24.0
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 7.3e-11 72.8 323 30.3
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 9.6e-11 72.4 133 44.4
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.6e-10 71.6 50 64.0
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 8.1e-10 69.3 86 43.0
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.8e-09 68.2 126 41.3
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 3.8e-07 60.5 238 26.9
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 4.2e-06 57.0 52 63.5
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 5.5e-06 56.6 129 31.0


User provided reference genes

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