Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.2e-305 1052.4 544 100.0
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 3.3e-258 894.8 544 84.9
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 4.7e-257 891.0 545 85.9
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 2.2e-254 882.1 547 85.0
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 9.2e-245 850.1 544 81.4
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 3.0e-243 845.1 545 80.0
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 2.4e-240 835.5 545 80.6
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 6.8e-240 833.9 547 81.4
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.2e-236 823.2 543 79.6
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 4.6e-236 821.2 545 78.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 3.1e-232 808.5 527 80.5
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 3.2e-229 798.5 587 71.6
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 1.6e-172 610.1 401 80.8
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 2.1e-140 503.4 553 50.1
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 2.3e-139 500.0 546 51.5
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 2.9e-137 493.0 546 51.3
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.1e-136 491.1 567 47.6
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.6e-135 487.3 548 51.6
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 2.5e-133 479.9 544 50.9
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 8.1e-132 474.9 556 47.7
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 6.8e-131 471.9 550 49.1
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 5.8e-130 468.8 555 46.7
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 1.3e-129 467.6 560 47.3
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.7e-129 467.2 599 46.2
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 4.9e-129 465.7 576 45.7
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 6.4e-129 465.3 561 47.6
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 1.1e-128 464.5 546 48.7
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 5.4e-128 462.2 564 45.6
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 7.1e-128 461.8 551 46.8
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 1.2e-127 461.1 546 49.1
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 2.1e-127 460.3 548 48.5
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 3.5e-127 459.5 532 47.6
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 6.0e-127 458.8 584 47.1
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 7.8e-127 458.4 570 45.8
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 7.8e-127 458.4 716 40.1
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 1.3e-126 457.6 587 45.8
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 6.6e-126 455.3 554 47.5
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 2.1e-124 450.3 551 45.2
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 3.6e-124 449.5 568 46.5
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 8.9e-123 444.9 584 46.6
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 1.2e-122 444.5 576 46.7
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.5e-122 444.1 549 48.5
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 7.6e-122 441.8 554 46.0
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 3.8e-121 439.5 554 46.0
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 1.1e-120 438.0 559 44.9
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.2e-119 434.5 574 46.3
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 7.8e-119 431.8 558 45.0
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.0e-118 431.4 545 45.3
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 3.9e-118 429.5 572 44.2
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 5.1e-118 429.1 546 44.9
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.1e-117 427.9 593 44.5
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.8e-116 423.3 558 45.3
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.1e-115 421.4 533 47.1
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 5.8e-114 415.6 545 43.3
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 5.8e-114 415.6 543 44.9
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 2.9e-113 413.3 574 42.7
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 6.4e-113 412.1 581 44.8
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.1e-112 411.4 576 43.4
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 9.3e-112 408.3 578 43.1
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 2.7e-111 406.8 548 44.5
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 1.0e-110 404.8 549 44.3
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 1.9e-109 400.6 551 43.9
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 1.9e-109 400.6 558 42.5
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.1e-107 394.8 587 40.5
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 6.9e-107 392.1 578 43.4
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.5e-106 391.0 586 40.8
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 7.6e-106 388.7 548 42.9
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 3.2e-104 383.3 551 41.6
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 2.1e-103 380.6 543 40.9
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 5.1e-102 375.9 554 43.1
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 1.5e-101 374.4 615 36.9
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 3.3e-101 373.2 531 41.6
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.3e-101 372.9 543 43.3
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 1.5e-98 364.4 562 42.0
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 7.6e-98 362.1 528 42.8
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.7e-97 360.9 522 42.5
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 2.9e-97 360.1 534 41.0
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.9e-96 357.5 556 42.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.5e-96 357.1 583 40.3
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.2e-96 356.3 708 37.3
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.1e-95 354.0 558 38.7
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 3.1e-91 340.1 503 42.1
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 4.0e-91 339.7 499 43.5
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.9e-88 330.9 482 42.1
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 4.2e-88 329.7 585 38.1
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 1.2e-87 328.2 482 42.1
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.3e-85 319.7 494 40.9
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 1.1e-83 315.1 458 41.3
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 2.6e-82 310.5 562 37.5
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 1.0e-73 282.0 413 44.8
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 1.7e-73 281.2 490 37.3
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 2.3e-70 270.8 597 33.8
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 3.7e-68 263.5 475 37.1
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.9e-65 253.8 410 40.7
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 2.3e-62 244.2 207 56.5
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 9.7e-61 238.8 407 40.5
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 2.7e-55 220.7 544 33.1
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 5.2e-54 216.5 471 34.6
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 9.8e-53 212.2 501 32.5
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 4.8e-52 209.9 195 52.8
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.4e-51 207.6 440 34.3
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 3.6e-47 193.7 211 48.3
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 5.2e-46 189.9 149 61.7
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.4e-45 187.2 149 61.1
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 7.5e-45 186.0 359 37.6
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-44 184.9 432 32.4
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 7.0e-43 179.5 319 43.6
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.4e-35 155.2 139 51.8
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.4e-35 154.5 119 60.5
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 8.6e-33 146.0 595 28.4
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 2.1e-31 141.4 216 44.9
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 6.8e-30 136.3 366 30.6
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 2.2e-28 131.3 122 51.6
BcaNung05241 Brassica carinata HOM05D006560 ORTHO05D008164 1.2e-21 109.0 135 58.5
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 3.5e-18 97.4 82 67.1
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 5.8e-13 80.1 203 29.1
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 6.4e-12 76.6 71 52.1
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 8.4e-12 76.3 163 30.7
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 7.8e-10 69.7 48 62.5
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 4.7e-07 60.5 30 80.0


User provided reference genes

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