Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 7.8e-230 800.0 388 100.0
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 3.2e-215 751.5 387 92.8
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 5.4e-215 750.7 388 93.8
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 7.1e-215 750.4 388 93.6
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 7.1e-215 750.4 388 93.6
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 9.3e-215 750.0 383 94.5
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 1.2e-214 749.6 388 93.6
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.1e-212 743.0 388 92.0
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.5e-212 742.7 387 92.0
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 1.9e-212 742.3 388 91.5
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 4.3e-212 741.1 388 93.0
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.8e-186 656.0 368 84.2
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 6.3e-171 604.4 374 75.1
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.3e-168 596.7 364 76.9
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.1e-167 593.6 365 75.1
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 1.9e-167 592.8 360 76.4
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.2e-167 592.0 365 76.7
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 5.5e-167 591.3 363 74.4
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 7.2e-167 590.9 372 74.2
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.7e-166 589.0 369 74.0
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 3.6e-166 588.6 369 72.9
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 6.1e-166 587.8 370 73.5
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 6.1e-166 587.8 369 74.5
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 8.0e-166 587.4 366 73.2
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 1.4e-165 586.6 364 75.8
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 2.3e-165 585.9 370 73.5
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 2.3e-165 585.9 364 75.8
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 5.2e-165 584.7 364 75.5
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 7.4e-164 580.9 372 72.0
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 1.3e-163 580.1 364 75.8
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.7e-163 579.7 370 73.0
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 2.8e-163 578.9 369 72.6
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.8e-163 578.9 364 74.7
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 3.7e-163 578.6 365 74.8
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 4.8e-163 578.2 361 73.4
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 8.2e-163 577.4 360 76.1
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 2.4e-162 575.9 361 73.4
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 3.1e-162 575.5 364 75.3
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 7.0e-162 574.3 364 73.6
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 9.1e-162 573.9 376 72.3
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 1.2e-161 573.5 371 71.2
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 3.5e-161 572.0 363 73.3
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 4.5e-161 571.6 367 71.9
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 4.5e-161 571.6 364 72.5
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 7.7e-161 570.9 365 73.4
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 1.0e-160 570.5 368 72.0
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 1.0e-160 570.5 364 73.6
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.2e-160 569.3 369 71.0
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 2.2e-160 569.3 361 72.0
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 5.0e-160 568.2 361 74.2
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 5.0e-160 568.2 360 71.7
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 5.0e-160 568.2 364 73.4
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 6.5e-160 567.8 364 73.4
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 1.1e-159 567.0 378 70.1
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.5e-159 566.6 361 72.9
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.5e-159 566.6 356 75.6
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.5e-159 566.6 356 75.6
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 1.5e-159 566.6 360 72.5
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 2.5e-159 565.8 364 74.2
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 4.2e-159 565.1 367 71.1
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.2e-159 565.1 368 72.8
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 5.5e-159 564.7 365 74.0
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.6e-158 563.1 363 73.0
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 2.1e-158 562.8 364 72.5
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 2.1e-158 562.8 366 71.6
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 2.7e-158 562.4 363 72.2
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 3.6e-158 562.0 407 66.6
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 6.1e-158 561.2 366 71.6
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 1.0e-157 560.5 366 70.2
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 1.4e-157 560.1 368 70.9
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 1.8e-157 559.7 367 70.3
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 4.0e-157 558.5 365 70.4
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 6.7e-157 557.8 366 71.6
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 6.7e-157 557.8 361 70.6
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 2.6e-156 555.8 361 70.1
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 3.3e-156 555.4 391 67.5
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 4.4e-156 555.1 375 69.9
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 7.5e-156 554.3 371 70.4
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 7.5e-156 554.3 367 68.9
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 9.7e-156 553.9 360 71.4
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 2.8e-155 552.4 366 69.7
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 3.7e-155 552.0 405 66.7
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 6.3e-155 551.2 365 69.6
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 8.2e-155 550.8 367 69.8
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 1.1e-154 550.4 364 70.1
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 2.4e-154 549.3 360 70.6
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 5.3e-154 548.1 361 69.8
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 7.0e-154 547.7 361 69.3
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 9.1e-154 547.4 357 71.4
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 2.0e-153 546.2 364 69.8
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 5.9e-153 544.7 368 67.7
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 7.7e-153 544.3 360 69.2
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 5.0e-152 541.6 390 65.9
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 5.0e-152 541.6 364 68.7
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 6.5e-152 541.2 369 68.3
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 8.5e-152 540.8 370 69.2
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 8.5e-152 540.8 364 69.0
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 8.5e-152 540.8 364 68.7
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.5e-151 540.0 392 65.1
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.9e-151 539.7 360 70.6
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 2.5e-151 539.3 361 69.5
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 4.2e-151 538.5 361 69.3
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 4.2e-151 538.5 360 70.3
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 9.4e-151 537.3 361 69.0
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 9.4e-151 537.3 319 77.4
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 1.2e-150 537.0 382 64.9
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 2.7e-150 535.8 366 69.1
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 6.1e-150 534.6 366 68.9
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 8.0e-150 534.3 363 69.7
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 1.2e-148 530.4 349 71.1
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.2e-148 530.4 366 68.6
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 4.4e-148 528.5 376 65.4
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 1.3e-147 526.9 366 65.8
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 1.7e-147 526.6 376 67.6
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 7.7e-145 517.7 350 67.7
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 8.0e-142 507.7 397 61.2
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 8.0e-142 507.7 397 61.2
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 1.3e-139 500.4 361 64.0
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 1.4e-138 496.9 319 72.7
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 3.8e-136 488.8 364 61.8
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 1.2e-134 483.8 313 69.6
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 5.8e-132 474.9 336 65.2
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.7e-131 473.4 366 62.8
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 3.9e-128 462.2 319 67.1
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 3.4e-124 449.1 339 64.6
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 4.4e-124 448.7 333 61.3
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 7.0e-122 441.4 341 61.6
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.0e-120 436.0 343 61.8
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 4.3e-119 432.2 311 67.5
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.0e-116 423.3 372 55.6
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.7e-115 420.2 356 57.3
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 1.3e-112 410.6 322 59.6
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.5e-111 406.4 356 55.1
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 1.6e-110 403.7 246 76.8
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 2.2e-107 393.3 287 62.4
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 5.1e-104 382.1 368 53.8
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 5.6e-103 378.6 250 72.0
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 1.4e-101 374.0 329 52.3
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 6.9e-101 371.7 253 70.0
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.8e-91 339.3 212 73.6
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 3.1e-85 319.7 191 76.4
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 7.1e-82 308.5 158 91.8
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 2.5e-79 300.1 360 43.9
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.3e-75 287.7 167 82.6
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 4.1e-69 266.2 368 41.0
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 1.3e-62 244.6 549 29.7
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 4.2e-58 229.6 343 37.3
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 2.1e-57 227.3 316 40.8
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 1.5e-52 211.1 278 41.7
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 9.1e-45 185.3 144 58.3
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-42 178.3 133 58.6
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 3.0e-40 170.2 133 56.4
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.1e-37 159.8 124 57.3
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 4.4e-31 139.8 85 75.3
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 5.7e-31 139.4 240 35.4
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 6.6e-27 125.9 317 29.3
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 5.2e-24 116.3 76 69.7
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 8.3e-22 109.0 60 80.0
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.2e-20 105.1 66 71.2
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.6e-20 103.2 75 64.0
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 2.3e-19 100.9 150 40.7
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 2.5e-18 97.4 80 60.0
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.3e-18 96.7 150 39.3
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.6e-17 94.7 83 57.8
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 2.1e-17 94.4 53 77.4
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 2.8e-17 94.0 48 87.5
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.0e-16 92.0 78 56.4
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.8e-16 91.3 49 83.7
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 2.3e-16 90.9 53 75.5
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 3.1e-16 90.5 59 69.5
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 3.1e-16 90.5 75 52.0
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 4.0e-16 90.1 69 65.2
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.0e-16 90.1 58 72.4
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 7.5e-15 85.9 49 79.6
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.7e-14 84.7 45 86.7
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.7e-14 83.6 143 36.4
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.1e-13 82.0 143 36.4
Cre09.g387319 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D005503 7.8e-12 75.9 259 28.2
Sopen01g034430 Solanum pennellii HOM05D003957 ORTHO05D030633 4.0e-08 63.5 86 38.4
Cre10.g423400 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044199 6.8e-08 62.8 186 26.9
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 9.8e-07 58.9 304 23.0
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 1.3e-06 58.5 144 29.2
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 1.7e-06 58.2 264 23.1
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 4.9e-06 56.6 237 24.9
Dinv26852 Davidia involucrata HOM05D004633 ORTHO05D005503 6.4e-06 56.2 144 27.1


User provided reference genes

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