Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.4e-189 665.2 435 100.0
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.6e-149 532.7 442 71.3
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.9e-148 529.3 443 74.9
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 4.6e-146 521.9 440 73.4
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 4.6e-146 521.9 440 73.4
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 4.6e-146 521.9 440 73.4
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 7.8e-146 521.2 439 72.9
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-143 513.8 437 73.9
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 2.8e-143 512.7 437 73.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.6e-143 512.3 443 69.3
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.8e-137 493.4 441 72.1
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.7e-132 476.9 437 68.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.6e-125 453.0 438 68.9
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.7e-124 450.3 438 66.0
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.7e-124 450.3 438 66.4
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 2.2e-124 449.9 438 68.3
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.3e-111 407.5 439 58.1
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.1e-107 394.4 460 55.7
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 7.4e-104 381.7 428 56.1
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.4e-102 376.7 464 51.9
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.5e-101 374.0 450 58.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 4.2e-99 365.9 436 60.1
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.7e-98 363.2 455 53.2
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 6.1e-98 362.1 479 53.2
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.0e-97 361.3 446 53.6
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.3e-97 360.1 471 51.4
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.5e-96 357.5 442 55.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.0e-89 333.2 447 51.7
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.0e-89 333.2 447 51.7
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 4.0e-89 332.8 440 50.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 9.8e-88 328.2 439 51.3
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.8e-87 326.6 440 48.2
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 8.3e-87 325.1 466 49.4
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 5.9e-85 318.9 467 47.1
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 6.5e-84 315.5 458 49.1
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 6.5e-84 315.5 461 47.9
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 8.5e-84 315.1 449 54.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.1e-83 314.7 460 52.8
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.1e-83 314.7 455 49.9
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 2.5e-83 313.5 455 48.8
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.2e-83 312.0 451 49.4
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 9.4e-83 311.6 458 48.5
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.2e-82 311.2 466 51.5
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 2.1e-82 310.5 464 47.8
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.7e-82 310.1 468 56.0
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.7e-82 310.1 466 49.4
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.7e-82 310.1 475 48.0
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.7e-82 309.3 456 45.4
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 6.1e-82 308.9 472 44.9
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 6.1e-82 308.9 446 47.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.1e-82 308.9 457 49.9
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.4e-81 307.8 445 53.9
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.8e-81 307.4 452 46.2
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.8e-81 307.4 458 48.5
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 2.3e-81 307.0 463 56.2
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.3e-81 307.0 439 47.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 3.0e-81 306.6 455 45.5
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 4.0e-81 306.2 460 50.2
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 6.8e-81 305.4 443 51.5
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 8.8e-81 305.1 442 48.2
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.2e-80 304.7 453 51.9
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 2.0e-80 303.9 450 50.0
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 5.7e-80 302.4 446 44.4
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 9.8e-80 301.6 457 45.5
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.8e-79 300.1 443 46.5
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 6.3e-79 298.9 450 53.1
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.4e-78 297.0 454 48.9
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.1e-78 296.2 464 47.8
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.1e-78 296.2 454 48.7
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 9.1e-78 295.0 456 51.1
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 9.1e-78 295.0 436 46.3
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.2e-77 294.7 446 47.3
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 5.9e-77 292.4 448 45.1
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.9e-77 292.4 451 45.0
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 7.7e-77 292.0 489 45.6
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.7e-77 292.0 466 44.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.0e-76 291.6 486 49.0
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.3e-76 291.2 451 45.5
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.7e-76 290.8 475 43.2
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.7e-76 290.8 467 46.5
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.3e-76 290.4 493 50.5
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 3.8e-76 289.7 462 51.7
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 5.0e-76 289.3 475 44.0
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.6e-76 288.9 446 51.8
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.1e-75 288.1 448 54.5
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.1e-75 288.1 451 51.0
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.5e-75 287.0 469 42.4
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.5e-75 287.0 442 45.9
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 5.5e-75 285.8 437 49.7
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 7.2e-75 285.4 458 44.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 2.1e-74 283.9 452 43.6
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 3.6e-74 283.1 437 47.6
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.4e-73 281.2 500 50.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 2.3e-73 280.4 448 50.4
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 3.0e-73 280.0 463 53.6
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 4.0e-73 279.6 490 40.8
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 4.0e-73 279.6 481 49.5
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 8.9e-73 278.5 439 51.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 8.9e-73 278.5 449 54.6
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 8.9e-73 278.5 479 45.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.2e-72 278.1 447 48.1
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.5e-72 277.7 471 48.4
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.0e-72 277.3 452 47.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 2.6e-72 276.9 454 53.3
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 2.6e-72 276.9 461 44.9
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.6e-72 276.9 455 42.4
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.4e-72 276.6 440 51.4
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.4e-72 276.6 444 48.4
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.4e-72 276.2 523 48.4
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 5.7e-72 275.8 437 46.2
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 5.7e-72 275.8 495 48.1
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 1.3e-71 274.6 457 48.8
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 1.3e-71 274.6 436 51.8
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.3e-71 274.6 465 49.7
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.2e-71 273.9 466 45.7
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 2.9e-71 273.5 461 49.7
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 3.7e-71 273.1 471 42.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.4e-70 271.2 441 47.8
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.4e-70 270.4 441 48.3
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 2.4e-70 270.4 462 45.5
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 5.4e-70 269.2 461 45.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.2e-69 268.1 469 45.6
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.6e-69 267.7 414 46.4
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 1.6e-69 267.7 449 41.4
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.0e-68 265.0 445 48.3
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.9e-67 260.8 480 43.5
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 5.6e-67 259.2 455 43.3
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 5.6e-67 259.2 455 43.3
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-66 257.7 455 43.1
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.6e-66 257.7 450 53.3
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.7e-66 256.1 441 48.5
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.4e-65 254.6 459 44.0
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 5.2e-65 252.7 379 45.6
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 9.8e-64 248.4 458 49.8
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.7e-63 247.7 482 41.3
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 2.2e-63 247.3 154 85.1
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 6.4e-63 245.7 455 45.1
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.1e-62 245.0 417 44.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 4.1e-62 243.0 473 51.4
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.1e-62 243.0 235 60.4
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.0e-60 238.4 446 43.7
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.5e-59 234.6 481 40.1
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.5e-59 233.8 434 45.4
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.3e-59 233.0 234 59.4
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 4.4e-56 223.0 465 40.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 3.1e-49 200.3 436 42.0
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 7.6e-48 195.7 450 40.2
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 2.2e-47 194.1 442 44.8
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.2e-46 190.3 477 34.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.3e-44 184.9 490 33.5
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.1e-42 177.6 348 40.5
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 6.2e-42 176.0 104 88.5
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-37 161.8 121 73.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.0e-36 158.7 453 32.5
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.8e-34 150.6 348 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.4e-33 148.3 475 37.5
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-32 144.4 124 67.7
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 2.0e-32 144.4 124 67.7
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 4.4e-32 143.3 91 85.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.4e-31 139.4 171 50.3
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 9.3e-30 135.6 467 34.5
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.6e-29 134.8 86 77.9
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 7.9e-29 132.5 348 35.1
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.3e-28 131.7 122 66.4
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 3.9e-28 130.2 122 65.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.4e-22 110.9 88 67.0
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 9.3e-22 109.0 128 41.4
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.5e-19 100.9 138 41.3
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.4e-14 85.1 71 60.6
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 4.2e-14 83.6 228 31.6
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 1.1e-11 75.5 88 51.1
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 2.5e-11 74.3 158 34.2
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 9.6e-11 72.4 118 42.4
BraA08t32263Z Brassica rapa HOM05D003909 ORTHO05D004478 6.3e-10 69.7 57 71.9
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.5e-08 65.1 105 42.9
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 4.5e-08 63.5 132 31.8
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 2.2e-07 61.2 128 32.0
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.9e-07 60.8 118 44.9


User provided reference genes

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