Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 8.8e-85 317.0 170 100.0
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 2.4e-21 106.3 90 68.9
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 5.2e-21 105.1 90 67.8
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 5.2e-21 105.1 90 71.1
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 5.2e-21 105.1 90 71.1
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 5.2e-21 105.1 90 71.1
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 8.9e-21 104.4 90 68.9
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.2e-20 104.0 90 66.7
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 1.5e-20 103.6 90 66.7
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 2.6e-20 102.8 90 68.9
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 2.6e-20 102.8 90 68.9
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 2.6e-20 102.8 90 68.9
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 2.6e-20 102.8 90 68.9
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 2.6e-20 102.8 90 68.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.6e-20 102.8 156 48.1
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 2.6e-20 102.8 90 68.9
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 3.4e-20 102.4 90 68.9
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 3.4e-20 102.4 93 65.6
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.4e-20 102.4 103 62.1
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 70.0
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 68.9
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 68.9
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 68.9
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 68.9
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 4.4e-20 102.1 87 67.8
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 67.8
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 67.8
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 4.4e-20 102.1 90 68.9
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 66.7
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 66.7
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 5.8e-20 101.7 90 67.8
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 7.6e-20 101.3 90 66.7
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 9.9e-20 100.9 90 67.8
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 9.9e-20 100.9 91 67.0
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 9.9e-20 100.9 90 67.8
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 9.9e-20 100.9 90 67.8
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 9.9e-20 100.9 90 68.9
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 1.3e-19 100.5 90 66.7
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 1.3e-19 100.5 90 66.7
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 1.3e-19 100.5 90 66.7
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 1.3e-19 100.5 90 66.7
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.3e-19 100.5 90 66.7
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.7e-19 100.1 127 52.8
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 65.6
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 1.7e-19 100.1 90 66.7
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 66.7
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 65.6
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 2.2e-19 99.8 90 67.8
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 2.9e-19 99.4 128 52.3
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 64.4
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 66.7
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 65.6
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 66.7
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 66.7
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 66.7
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 3.8e-19 99.0 90 65.6
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 4.9e-19 98.6 90 64.4
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 66.7
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 4.9e-19 98.6 90 65.6
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 6.4e-19 98.2 90 66.7
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 6.4e-19 98.2 90 64.4
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 6.4e-19 98.2 90 65.6
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 6.4e-19 98.2 90 66.7
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 6.4e-19 98.2 90 65.6
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 8.4e-19 97.8 90 65.6
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 8.4e-19 97.8 90 65.6
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 8.4e-19 97.8 90 65.6
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 1.1e-18 97.4 127 51.2
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 1.4e-18 97.1 90 64.4
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 1.4e-18 97.1 90 63.3
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 1.9e-18 96.7 90 64.4
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.9e-18 96.7 90 64.4
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 1.9e-18 96.7 90 64.4
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 2.4e-18 96.3 90 65.6
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 2.4e-18 96.3 90 65.6
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 2.4e-18 96.3 90 62.2
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 2.4e-18 96.3 86 67.4
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.4e-18 96.3 90 63.3
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 4.2e-18 95.5 90 65.6
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 4.2e-18 95.5 90 62.2
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 4.2e-18 95.5 91 63.7
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 7.1e-18 94.7 90 64.4
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 7.1e-18 94.7 90 64.4
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 9.3e-18 94.4 90 62.2
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 1.6e-17 93.6 90 63.3
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 2.7e-17 92.8 89 62.9
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 3.5e-17 92.4 90 63.3
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 3.5e-17 92.4 127 49.6
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 1.0e-16 90.9 127 48.8
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 1.3e-16 90.5 89 62.9
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.1e-16 88.6 89 61.8
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.5e-15 86.3 107 53.3
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 4.3e-15 85.5 90 61.1
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 9.6e-15 84.3 133 47.4
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 9.6e-15 84.3 91 57.1
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.8e-14 82.8 133 48.1
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 8.1e-14 81.3 89 57.3
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 8.1e-14 81.3 64 70.3
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 4.0e-13 79.0 88 53.4
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 4.0e-13 79.0 105 51.4
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 4.0e-13 79.0 90 55.6
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 2.0e-12 76.6 53 77.4
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 1.3e-11 73.9 90 53.3
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 1.9e-10 70.1 123 39.8
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 4.2e-10 68.9 69 58.0
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 7.1e-10 68.2 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 1.2e-09 67.4 52 69.2
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 2.7e-09 66.2 89 51.7
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 1.0e-08 64.3 80 51.2
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 8.7e-08 61.2 69 55.1
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 1.3e-06 57.4 65 49.2


User provided reference genes

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