Gene: Solyc04g049490.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g049490.3
  • Transcript Identifier Solyc04g049490.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 41310394-41330092 : positive

Gene Family Information

  • ID HOM05D003391
  • #Genes/#Species 202/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g049490.3.1
  • uniprot A0A3Q7G0R4
  • gene_id Solyc04g049490

Descriptions

  • Description Vacuolar protein sorting-associated protein 53 A (AHRD V3.3 *** A0A2G3AN71_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT1G50500
GO:0007009
ISO
PLAZA Integrative Orthologyplasma membrane organization AT1G50500
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT1G50500
GO:0010286
ISO
PLAZA Integrative Orthologyheat acclimation AT1G50500
GO:0042147
IBA
IEA
GOA Databaseretrograde transport, endosome to Golgi
GO:0042147
IEA
InterProretrograde transport, endosome to Golgi

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G50500

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000938
IBA
IEA
GOA DatabaseGARP complex
GO:0000938
IEA
InterProGARP complex
GO:0000139
ISO
PLAZA Integrative OrthologyGolgi membrane AT1G50500
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G50500
GO:0005768
IEA
GOA Databaseendosome
GO:0010008
IEA
GOA Databaseendosome membrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0016020
IEA
GOA Databasemembrane
GO:0005829
IEA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038260 Vps53, C-terminal domain superfamily
IPR039766 Vacuolar protein sorting-associated protein 53
IPR007234 Vps53-like, N-terminal
Mapman id Description
22.3.4.8.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS53/HIT1