Gene: AT1G50500

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G50500
  • Transcript Identifier AT1G50500.1
  • Gene Type Coding gene
  • Location Chr1 : 18708217-18715597 : negative

Gene Family Information

  • ID HOM05D003391
  • #Genes/#Species 202/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G50500.1
  • symbol HIT1
  • Alias ATVPS53,ARABIDOPSIS THALIANA VPS53 HOMOLOG,VPS53
  • full_name HEAT-INTOLERANT 1
  • uniprot Q0WQF4

Descriptions

  • Description Membrane trafficking VPS53 family protein
  • Computational description HEAT-INTOLERANT 1 (HIT1); CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50970.1); Has 898 Blast hits to 860 proteins in 251 species: Archae - 12; Bacteria - 82; Metazoa - 379; Fungi - 169; Plants - 68; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010286
IMP
Gene Ontologyheat acclimation1
GO:0042147
IBA
IEA
Gene Ontologyretrograde transport, endosome to Golgi2
GO:0042147
IEA
InterProretrograde transport, endosome to Golgi
GO:0015031
IEA
GOA Databaseprotein transport
GO:0007009
IMP
Gene Ontologyplasma membrane organization1
GO:0009408
IMP
Gene Ontologyresponse to heat3
GO:0006970
IMP
Gene Ontologyresponse to osmotic stress3
GO:0006890
ISS
Gene Ontologyretrograde vesicle-mediated transport, Golgi to endoplasmic reticulum3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000938
IDA
IBA
IEA
Gene OntologyGARP complex1 2
GO:0000938
IEA
InterProGARP complex
GO:0016020
IEA
GOA Databasemembrane
GO:0005768
IEA
GOA Databaseendosome
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion4
GO:0005737
IEA
GOA Databasecytoplasm
GO:0010008
IEA
GOA Databaseendosome membrane
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0000139
IDA
Gene OntologyGolgi membrane1
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
ISM
Gene OntologyGolgi apparatus
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
RCA
Gene Ontologycytosol5
GO:0005886
ISM
Gene Ontologyplasma membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039766 Vacuolar protein sorting-associated protein 53
IPR038260 Vps53, C-terminal domain superfamily
IPR007234 Vps53-like, N-terminal
Mapman id Description
22.3.4.8.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS53/HIT1