Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 4.5e-297 1023.8 528 100.0
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.5e-271 938.3 528 91.1
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 8.0e-270 933.3 528 91.1
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 2.3e-269 931.8 528 90.9
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 1.4e-266 922.5 531 89.8
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 3.5e-265 917.9 525 90.5
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 2.3e-264 915.2 528 89.4
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 3.0e-264 914.8 526 89.7
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 6.6e-264 913.7 528 89.4
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 8.6e-264 913.3 528 89.2
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.9e-256 887.9 528 87.5
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.1e-250 869.8 526 85.2
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 6.6e-248 860.5 500 88.8
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 2.0e-220 769.2 497 79.5
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 6.9e-205 717.6 503 74.0
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 6.9e-205 717.6 490 75.9
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.2e-204 716.8 517 72.1
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 1.3e-203 713.4 493 74.4
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 2.2e-203 712.6 496 74.2
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 6.5e-203 711.1 490 72.2
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 1.9e-202 709.5 508 71.7
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 7.2e-202 707.6 504 70.2
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 1.6e-201 706.4 497 72.8
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.6e-201 706.4 490 73.9
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.1e-201 706.1 490 72.4
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 7.9e-201 704.1 499 70.5
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.4e-200 703.4 499 72.5
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.8e-200 703.0 497 72.6
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.8e-200 703.0 490 70.4
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 3.9e-200 701.8 501 72.1
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 3.9e-200 701.8 493 71.8
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 5.1e-200 701.4 488 73.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 6.7e-200 701.0 494 71.9
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 6.7e-200 701.0 501 71.5
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 1.5e-199 699.9 495 72.3
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 2.0e-199 699.5 516 71.3
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 2.0e-199 699.5 514 70.8
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 3.3e-199 698.7 507 68.6
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.7e-198 696.4 497 73.0
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 3.7e-198 695.3 500 71.4
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 6.3e-198 694.5 479 73.7
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 1.1e-197 693.7 501 71.1
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.1e-197 693.7 492 72.4
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.8e-197 693.0 501 71.3
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 1.8e-197 693.0 493 71.8
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.8e-197 693.0 492 72.0
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 3.1e-197 692.2 497 72.8
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 3.1e-197 692.2 487 70.6
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 3.1e-197 692.2 497 71.8
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 3.1e-197 692.2 497 71.6
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 3.1e-197 692.2 497 71.4
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 4.1e-197 691.8 495 70.3
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 7.0e-197 691.0 489 72.2
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 9.1e-197 690.6 502 70.3
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 9.1e-197 690.6 501 71.3
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 1.2e-196 690.3 498 70.9
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 5.9e-196 688.0 497 71.2
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 1.0e-195 687.2 487 71.9
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.0e-195 687.2 497 71.2
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.3e-195 686.8 500 70.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 1.3e-195 686.8 493 71.2
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.7e-195 686.4 496 69.0
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 6.5e-195 684.5 494 71.1
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 6.5e-195 684.5 513 70.2
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.5e-195 684.1 491 72.1
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.4e-194 683.3 516 69.4
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 4.2e-194 681.8 489 72.0
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 5.5e-194 681.4 498 70.5
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 5.5e-194 681.4 495 68.9
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 7.2e-194 681.0 499 71.5
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 9.4e-194 680.6 487 70.2
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.2e-193 680.2 500 69.4
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.2e-193 680.2 515 68.9
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.6e-193 679.9 509 69.9
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 3.6e-193 678.7 512 69.1
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 3.6e-193 678.7 488 70.9
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 6.1e-193 677.9 490 71.0
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 8.0e-193 677.6 498 70.5
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 1.0e-192 677.2 511 70.1
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 8.8e-192 674.1 491 70.5
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.7e-190 668.7 545 65.7
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.4e-189 666.0 487 71.5
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 2.4e-189 666.0 498 69.7
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.1e-189 664.1 463 73.9
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 9.1e-189 664.1 515 66.6
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.2e-188 663.7 490 68.8
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 2.6e-188 662.5 470 71.7
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.5e-188 662.1 484 69.8
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 2.5e-186 656.0 510 66.9
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 8.0e-185 651.0 482 68.9
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.2e-180 637.1 488 67.2
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 2.5e-178 629.4 436 72.0
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 2.1e-177 626.3 559 62.1
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 9.8e-175 617.5 514 61.7
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.3e-171 607.1 494 65.0
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 3.7e-166 589.0 514 59.9
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.7e-163 580.1 498 59.2
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.5e-162 577.0 615 52.4
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 9.8e-159 564.3 461 64.6
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.7e-158 563.5 474 61.6
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 4.6e-156 555.4 501 57.9
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 3.3e-154 549.3 503 58.4
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 3.6e-153 545.8 384 71.9
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 1.0e-139 501.1 488 56.4
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 1.8e-128 463.8 412 57.3
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.4e-125 454.1 346 69.7
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.1e-116 423.7 369 64.8
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.7e-102 377.5 538 43.7
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 6.1e-100 369.0 268 69.4
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 1.5e-95 354.4 258 69.4
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.4e-72 278.1 369 45.0
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.9e-71 272.7 189 68.8
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.5e-69 268.1 280 56.4
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.5e-66 255.8 459 38.8
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 4.1e-64 250.0 170 71.2
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 8.0e-60 235.7 147 78.2
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 4.8e-57 226.5 160 70.0
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 2.1e-52 211.1 230 49.6
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.2e-49 201.1 134 69.4
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 5.6e-45 186.4 119 74.8
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-42 177.9 139 73.4
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 1.9e-40 171.4 132 71.2
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 9.2e-40 169.1 153 56.2
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.6e-34 151.0 156 53.2
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.4e-32 143.3 169 51.5
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.1e-32 142.9 296 36.5
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 6.0e-31 139.8 198 41.4
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.8e-28 131.0 99 71.7
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.8e-28 131.0 99 71.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 4.7e-28 130.2 95 68.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 9.9e-26 122.5 117 54.7
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 3.7e-25 120.6 132 56.8
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 5.2e-19 100.1 146 43.2
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.9e-16 91.7 62 72.6
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 1.3e-14 85.5 62 74.2
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.0e-14 84.3 79 62.0
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 3.3e-13 80.9 203 31.0
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 2.4e-11 74.7 75 54.7
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-10 72.4 49 77.6
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 2.7e-07 61.2 102 35.3
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 2.7e-07 61.2 102 35.3
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.9e-06 57.4 110 32.7
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 3.9e-06 57.4 102 34.3
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 3.9e-06 57.4 109 32.1
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 5.1e-06 57.0 90 36.7
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 6.6e-06 56.6 110 32.7
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 6.6e-06 56.6 110 31.8
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 6.6e-06 56.6 102 33.3
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 8.7e-06 56.2 136 30.9
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 8.7e-06 56.2 102 33.3
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 8.7e-06 56.2 102 33.3


User provided reference genes

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