Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 1.8e-204 715.7 357 100.0
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 2.9e-186 655.2 344 93.9
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 2.4e-185 652.1 359 91.4
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 7.8e-184 647.1 358 91.6
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 2.5e-182 642.1 355 90.7
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 4.3e-182 641.3 354 89.5
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 9.5e-182 640.2 357 88.8
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 6.2e-181 637.5 354 89.3
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 8.1e-181 637.1 358 90.8
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 2.3e-180 635.6 348 91.4
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 1.5e-179 632.9 350 91.4
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 2.6e-179 632.1 349 91.4
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 2.4e-177 625.5 355 86.5
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 3.6e-173 611.7 358 88.0
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 3.1e-156 555.4 356 79.2
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 5.6e-142 508.1 351 72.4
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 1.0e-138 497.3 353 72.0
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 1.7e-138 496.5 357 70.0
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 2.5e-137 492.7 350 71.4
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 1.6e-136 490.0 356 69.9
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.0e-135 487.3 329 73.9
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.3e-135 486.9 326 74.8
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.3e-135 486.9 332 73.2
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 2.3e-135 486.1 329 73.9
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 3.0e-135 485.7 391 65.0
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 1.1e-134 483.8 357 70.6
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 1.5e-134 483.4 334 72.5
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 1.9e-134 483.0 369 68.3
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 9.6e-134 480.7 343 71.4
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 1.3e-133 480.3 370 68.6
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 2.1e-133 479.6 368 66.8
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 1.1e-132 477.2 337 69.7
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 5.9e-131 471.5 350 68.6
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 2.2e-130 469.5 320 71.9
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 2.2e-130 469.5 355 67.9
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 2.5e-129 466.1 362 66.3
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 4.2e-129 465.3 342 67.8
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 1.2e-128 463.8 372 65.1
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 2.1e-128 463.0 361 67.6
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 2.1e-128 463.0 332 71.1
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 2.7e-128 462.6 348 69.3
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 1.8e-127 459.9 339 67.0
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 3.9e-127 458.8 315 69.8
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 1.9e-126 456.4 318 70.1
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 9.7e-126 454.1 336 69.6
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 6.3e-125 451.4 357 65.8
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.1e-124 450.7 329 70.5
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 9.1e-124 447.6 356 65.4
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.2e-123 447.2 379 63.3
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 1.5e-123 446.8 363 63.6
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 3.4e-123 445.7 363 62.5
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 4.5e-123 445.3 352 63.9
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 1.0e-122 444.1 349 63.0
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 1.3e-122 443.7 372 64.5
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 1.3e-122 443.7 384 60.9
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.7e-122 443.4 362 65.5
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 3.8e-122 442.2 308 70.5
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 8.5e-122 441.0 302 70.9
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 3.2e-121 439.1 342 65.5
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 4.2e-121 438.7 347 65.1
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 7.2e-121 438.0 350 63.7
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 2.1e-120 436.4 342 64.0
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 2.7e-120 436.0 306 69.3
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 7.9e-120 434.5 312 68.3
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.0e-119 434.1 322 65.5
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 1.4e-119 433.7 374 59.4
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 1.4e-119 433.7 380 59.7
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 1.4e-119 433.7 346 65.9
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 8.8e-119 431.0 365 60.3
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 2.6e-118 429.5 343 63.6
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 1.3e-117 427.2 340 65.0
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 4.8e-117 425.2 360 61.4
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 4.8e-117 425.2 316 63.9
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 8.2e-117 424.5 330 64.5
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 1.2e-115 420.6 368 59.2
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 2.6e-115 419.5 309 66.0
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 1.0e-114 417.5 333 64.0
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.0e-114 417.5 303 67.0
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 2.2e-114 416.4 328 61.9
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 1.4e-108 397.1 370 58.6
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 2.9e-106 389.4 264 72.0
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.6e-104 383.6 356 59.0
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 1.4e-103 380.6 337 58.2
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 8.2e-101 371.3 287 64.1
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.6e-99 367.1 371 51.5
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 2.7e-99 366.3 312 57.1
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.0e-98 364.4 323 56.7
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.0e-98 364.4 323 56.7
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 5.0e-98 362.1 359 50.7
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 1.0e-95 354.4 318 56.3
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 1.4e-95 354.0 306 57.2
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 3.0e-95 352.8 297 62.0
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 4.0e-95 352.4 289 62.6
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 2.6e-94 349.7 288 62.2
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 4.4e-94 349.0 295 59.0
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 1.4e-92 344.0 235 71.1
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 2.2e-90 336.7 186 91.9
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 1.1e-89 334.3 309 54.0
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.0e-87 327.8 342 52.9
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 1.4e-79 300.8 342 52.0
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 1.5e-73 280.8 357 45.1
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 7.3e-73 278.5 169 78.1
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 2.3e-71 273.5 169 78.1
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 1.1e-68 264.6 171 72.5
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.0e-66 258.1 249 54.2
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 1.9e-65 253.8 410 38.8
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 1.4e-63 247.7 383 39.4
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 7.6e-54 215.3 127 79.5
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 9.9e-54 214.9 168 61.3
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 7.1e-44 182.2 202 50.0
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.4e-36 156.0 136 59.6
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 7.6e-30 135.6 96 67.7
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 4.9e-21 106.3 312 28.5
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.3e-18 98.2 241 32.0
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.4e-15 88.2 57 75.4
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 2.6e-14 84.0 50 74.0
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 6.1e-11 72.8 144 29.9
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 1.4e-07 61.6 109 36.7
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 2.4e-07 60.8 197 27.4
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 2.0e-06 57.8 169 28.4
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 2.6e-06 57.4 169 27.8
Peaxi162Scf00017g02522 Petunia axillaris HOM05D007129 ORTHO05D008680 7.7e-06 55.8 116 32.8


User provided reference genes

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