Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 2.8e-249 864.8 424 100.0
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 5.3e-240 833.9 425 96.2
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 5.3e-240 833.9 425 96.2
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 1.2e-239 832.8 425 96.2
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 2.0e-239 832.0 425 96.0
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 2.0e-239 832.0 425 96.0
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 2.0e-234 815.5 424 94.3
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 4.1e-232 807.7 424 93.4
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 7.0e-232 807.0 424 93.4
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 5.9e-231 803.9 424 92.2
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 1.0e-230 803.1 425 92.9
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 1.4e-219 766.1 424 89.2
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 1.2e-215 753.1 426 87.1
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 9.5e-197 690.3 425 79.3
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 1.3e-193 679.9 403 80.6
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.6e-191 672.9 425 76.9
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 1.6e-191 672.9 399 81.0
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 2.1e-191 672.5 420 77.6
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 3.5e-191 671.8 409 78.5
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 1.0e-190 670.2 432 76.4
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 6.6e-190 667.5 403 78.9
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 8.6e-190 667.2 396 80.8
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 1.1e-189 666.8 401 78.8
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 2.5e-189 665.6 392 80.9
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 2.5e-189 665.6 414 78.3
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 3.3e-189 665.2 401 78.3
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 3.3e-189 665.2 417 77.5
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 7.3e-189 664.1 417 76.7
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 9.5e-189 663.7 420 77.9
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 9.5e-189 663.7 420 76.4
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 1.6e-188 662.9 424 75.9
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 2.1e-188 662.5 408 79.2
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 4.7e-188 661.4 402 78.6
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 1.1e-187 660.2 409 77.8
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 1.4e-187 659.8 418 76.6
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.8e-187 659.4 417 76.3
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 3.1e-187 658.7 424 75.2
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 5.2e-187 657.9 395 80.0
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 6.8e-187 657.5 422 75.8
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 6.8e-187 657.5 420 76.2
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 8.9e-187 657.1 419 76.6
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 8.9e-187 657.1 417 75.8
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 8.9e-187 657.1 422 75.6
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 1.5e-186 656.4 424 75.2
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 2.0e-186 656.0 417 75.5
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 2.0e-186 656.0 425 75.5
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 2.6e-186 655.6 421 76.2
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 1.3e-185 653.3 403 78.9
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 1.3e-185 653.3 425 76.5
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 2.9e-185 652.1 420 75.0
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 2.9e-185 652.1 409 76.8
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 2.9e-185 652.1 409 76.8
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 2.9e-185 652.1 404 77.7
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 6.4e-185 651.0 429 73.9
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 1.1e-184 650.2 411 77.4
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 4.1e-184 648.3 426 73.9
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 5.4e-184 647.9 414 77.8
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 7.1e-184 647.5 422 75.1
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 7.1e-184 647.5 418 74.4
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 9.2e-184 647.1 420 74.8
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 2.1e-183 646.0 422 75.1
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 2.1e-183 646.0 424 74.3
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 7.8e-183 644.0 425 74.6
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 1.0e-182 643.7 421 74.8
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 1.3e-182 643.3 394 78.9
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 2.3e-182 642.5 422 72.7
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 3.9e-182 641.7 407 75.4
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 6.6e-182 641.0 414 76.3
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 6.6e-182 641.0 400 76.8
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 8.7e-182 640.6 418 74.9
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 1.1e-181 640.2 424 73.6
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 1.9e-181 639.4 425 74.1
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 1.9e-181 639.4 423 74.2
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 3.3e-181 638.6 407 75.2
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 5.6e-181 637.9 407 76.9
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 7.3e-181 637.5 390 78.2
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 2.1e-180 636.0 407 74.9
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 2.8e-180 635.6 417 72.9
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 2.8e-180 635.6 399 77.4
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 8.1e-180 634.0 423 74.2
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 2.2e-177 625.9 399 75.2
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 1.9e-176 622.9 421 71.7
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 6.9e-171 604.4 431 68.2
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 7.9e-167 590.9 387 72.9
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 7.9e-167 590.9 413 70.5
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 1.4e-163 580.1 359 78.0
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 1.8e-163 579.7 350 79.1
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 3.1e-163 578.9 414 67.1
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 4.5e-162 575.1 363 77.4
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 7.6e-162 574.3 373 76.1
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 4.2e-160 568.5 372 75.8
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 7.9e-159 564.3 365 76.2
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 1.0e-158 563.9 381 74.3
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 2.5e-152 542.7 323 78.0
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 1.8e-150 536.6 325 77.5
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 8.7e-150 534.3 404 63.1
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 2.5e-149 532.7 408 63.2
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 5.7e-149 531.6 336 75.3
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 1.8e-147 526.6 320 76.6
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 1.3e-145 520.4 356 71.6
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 6.5e-145 518.1 411 60.8
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 5.5e-144 515.0 327 74.6
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 1.2e-143 513.8 314 76.8
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 1.1e-141 507.3 398 59.8
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 6.3e-140 501.5 412 64.6
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 1.4e-136 490.3 313 72.8
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 1.7e-132 476.9 283 81.3
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 3.3e-125 452.6 318 73.6
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 3.1e-123 446.0 293 75.1
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 2.9e-121 439.5 267 76.8
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.8e-102 377.1 421 46.8
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 8.3e-100 368.2 270 60.4
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 1.6e-95 354.0 235 72.8
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 6.1e-95 352.1 430 44.9
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 4.0e-94 349.4 249 72.7
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 2.3e-81 307.0 199 73.9
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 1.1e-78 298.1 414 40.3
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 2.4e-67 260.4 458 34.3
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 4.2e-67 259.6 357 39.5
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 4.2e-59 233.0 325 41.8
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 1.5e-37 161.4 95 91.6
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 1.7e-28 131.3 81 71.6
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 1.2e-21 108.6 74 66.2
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 2.9e-20 104.0 94 61.7
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 1.2e-18 98.6 54 74.1
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 3.1e-14 84.0 135 37.0
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 5.5e-11 73.2 88 48.9
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 2.1e-10 71.2 61 52.5
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 3.0e-09 67.4 56 64.3


User provided reference genes

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