Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g024730 Solanum pennellii HOM05D035692 ORTHO05D020992 1.6e-80 302.8 157 100.0
Solyc12g062200.1 Solanum lycopersicum HOM05D035692 ORTHO05D020992 1.6e-40 169.9 93 96.8
Sopen08g017810 Solanum pennellii HOM05D035692 ORTHO05D020992 1.5e-30 136.7 83 85.5
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 8.0e-24 114.4 65 81.5
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 2.3e-23 112.8 80 70.0
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.0e-22 109.8 80 67.5
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 2.6e-22 109.4 85 65.9
Solyc07g150133.1 Solanum lycopersicum HOM05D001734 ORTHO05D020992 1.3e-21 107.1 98 59.2
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 6.3e-21 104.8 67 76.1
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 1.6e-16 90.1 65 64.6
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 2.1e-16 89.7 78 57.7
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 2.1e-16 89.7 64 62.5
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 3.6e-16 89.0 72 59.7
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 3.6e-16 89.0 65 63.1
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 1.4e-15 87.0 64 59.4
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 1.4e-15 87.0 76 55.3
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 4.0e-15 85.5 68 55.9
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 4.0e-15 85.5 68 54.4
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 5.2e-15 85.1 67 58.2
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 8.9e-15 84.3 61 60.7
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 1.2e-14 84.0 63 60.3
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 1.5e-14 83.6 68 54.4
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 2.0e-14 83.2 65 56.9
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 2.0e-14 83.2 111 44.1
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 2.0e-14 83.2 75 56.0
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 2.6e-14 82.8 63 58.7
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 2.6e-14 82.8 67 58.2
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 3.4e-14 82.4 67 53.7
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 4.4e-14 82.0 68 54.4
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 4.4e-14 82.0 68 55.9
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 4.4e-14 82.0 61 60.7
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 5.7e-14 81.6 63 58.7
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 7.5e-14 81.3 60 60.0
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 7.5e-14 81.3 64 57.8
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 7.5e-14 81.3 60 61.7
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 9.8e-14 80.9 60 60.0
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 9.8e-14 80.9 64 59.4
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.3e-13 80.5 64 59.4
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 1.7e-13 80.1 65 50.8
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 2.2e-13 79.7 64 51.6
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 2.8e-13 79.3 76 48.7
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 3.7e-13 79.0 64 54.7
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 4.9e-13 78.6 60 58.3
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 6.3e-13 78.2 60 55.0
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 6.3e-13 78.2 64 54.7
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 6.3e-13 78.2 65 56.9
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 8.3e-13 77.8 67 55.2
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 1.1e-12 77.4 68 52.9
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 1.1e-12 77.4 61 57.4
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 1.1e-12 77.4 68 50.0
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 1.1e-12 77.4 63 54.0
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 1.4e-12 77.0 61 60.7
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 1.8e-12 76.6 60 53.3
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 2.4e-12 76.3 60 53.3
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 2.4e-12 76.3 64 51.6
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 2.4e-12 76.3 60 53.3
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 4.1e-12 75.5 60 55.0
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 5.4e-12 75.1 60 51.7
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 5.4e-12 75.1 60 51.7
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 5.4e-12 75.1 61 54.1
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 5.4e-12 75.1 61 57.4
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 5.4e-12 75.1 73 49.3
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 7.0e-12 74.7 60 51.7
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 7.0e-12 74.7 60 51.7
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 7.0e-12 74.7 64 53.1
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 9.2e-12 74.3 60 51.7
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 9.2e-12 74.3 61 59.0
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 9.2e-12 74.3 66 50.0
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 1.2e-11 73.9 61 54.1
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 1.6e-11 73.6 59 52.5
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 1.6e-11 73.6 60 53.3
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.0e-11 73.2 61 54.1
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 4.5e-11 72.0 82 40.2
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 5.9e-11 71.6 61 52.5
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 5.9e-11 71.6 60 48.3
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 5.9e-11 71.6 68 51.5
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 7.8e-11 71.2 74 48.6
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 7.8e-11 71.2 71 46.5
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.3e-10 70.5 46 67.4
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 2.3e-10 69.7 61 50.8
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 2.9e-10 69.3 60 50.0
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 3.8e-10 68.9 58 55.2
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 5.0e-10 68.6 61 49.2
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 1.1e-09 67.4 65 46.2
SHI17004 Sapria himalayana HOM05D001734 ORTHO05D020992 3.3e-09 65.9 60 51.7
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 4.3e-09 65.5 68 48.5
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 4.3e-09 65.5 78 43.6
Sopen03g023740 Solanum pennellii HOM05D008678 ORTHO05D020992 1.2e-08 63.9 67 62.7
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 1.2e-08 63.9 73 47.9
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 2.3e-07 59.7 41 58.5
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 6.8e-07 58.2 60 41.7
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 1.2e-06 57.4 64 51.6
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.5e-06 57.0 45 55.6
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 2.0e-06 56.6 67 40.3
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 7.5e-06 54.7 65 41.5


User provided reference genes

Program Settings