Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 0.0e+00 1308.9 653 100.0
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 0.0e+00 1282.7 653 98.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 0.0e+00 1257.7 653 95.9
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.5e-305 1051.6 663 82.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 3.9e-290 1001.1 692 73.7
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 4.2e-284 981.1 665 78.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.6e-283 979.2 665 78.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-270 936.0 695 68.3
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.4e-270 934.9 695 68.3
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.0e-185 653.3 713 51.3
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.3e-181 639.8 701 50.9
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.2e-177 627.5 679 52.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 2.9e-176 622.9 712 49.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 8.4e-176 621.3 667 51.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.2e-175 619.0 672 51.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.6e-174 617.1 671 51.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 5.6e-172 608.6 702 49.7
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.2e-171 607.4 662 50.0
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 5.8e-169 598.6 659 50.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.3e-168 597.4 648 51.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.9e-168 595.5 709 48.4
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.1e-167 594.3 714 48.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.2e-167 592.8 726 46.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 3.2e-167 592.8 727 46.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.1e-166 590.1 656 50.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.7e-166 589.7 703 46.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.6e-166 589.0 658 49.1
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 9.6e-164 581.3 714 47.6
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.6e-163 579.3 704 47.0
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 6.2e-163 578.6 665 49.3
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-161 574.3 720 46.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.4e-161 572.8 720 46.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 5.8e-161 572.0 712 46.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.2e-160 570.1 720 47.6
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.9e-160 569.7 698 46.7
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.4e-160 568.2 711 48.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.4e-159 566.6 701 47.4
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.6e-158 563.9 694 46.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.6e-158 562.4 723 46.9
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 8.7e-157 558.1 706 44.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.3e-156 555.8 672 47.3
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.7e-155 552.7 714 46.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.8e-155 552.4 704 46.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 6.9e-154 548.5 709 47.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 9.0e-154 548.1 708 46.8
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.5e-153 547.4 731 45.6
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.6e-153 546.6 848 40.2
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.4e-153 546.2 706 46.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.0e-152 544.7 668 47.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.1e-151 541.2 732 45.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.5e-151 540.0 661 48.3
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 4.2e-151 539.3 709 43.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 5.5e-151 538.9 705 46.7
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.3e-151 538.1 709 45.8
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 9.3e-151 538.1 704 45.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-150 537.7 704 45.9
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 2.1e-150 537.0 706 45.8
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.5e-150 536.2 705 46.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.3e-149 533.5 724 43.4
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 7.4e-148 528.5 693 43.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 9.6e-148 528.1 678 45.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 2.1e-147 526.9 705 44.7
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-144 516.9 724 42.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-144 516.9 724 42.8
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 6.5e-144 515.4 724 43.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.5e-144 515.4 718 43.9
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.0e-141 508.1 699 42.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.3e-141 507.7 670 44.6
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.1e-141 505.8 706 44.6
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 6.7e-141 505.4 581 48.4
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 4.3e-140 502.7 672 43.6
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.7e-140 502.3 664 42.9
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-138 496.5 657 44.9
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 4.1e-138 496.1 653 45.3
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 7.7e-137 491.9 607 46.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.9e-136 490.0 679 45.1
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.5e-136 488.8 701 42.7
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 6.5e-136 488.8 687 43.7
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 2.7e-134 483.4 695 43.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.5e-132 476.9 699 42.3
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.7e-131 474.2 404 59.4
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.8e-128 463.0 638 41.8
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 6.5e-128 462.2 406 56.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 5.5e-127 459.1 674 42.4
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.6e-126 457.6 706 43.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 4.7e-126 456.1 714 41.3
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 3.9e-125 453.0 738 40.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.7e-125 452.2 685 41.9
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.6e-124 450.3 699 40.9
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.1e-122 443.4 690 39.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-121 441.4 539 49.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.0e-120 438.3 539 49.0
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.3e-120 438.0 493 52.1
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 2.2e-120 437.2 669 43.2
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.9e-120 436.8 675 41.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.2e-119 433.3 668 42.7
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 9.4e-119 431.8 669 42.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.2e-118 431.4 670 43.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.8e-117 427.6 667 43.5
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.8e-117 427.6 685 40.7
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.7e-115 421.0 531 45.4
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-114 416.8 675 40.4
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.8e-112 409.8 667 40.2
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 4.2e-111 406.4 681 38.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 7.2e-111 405.6 631 41.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.7e-110 403.7 641 40.2
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 4.7e-110 402.9 630 41.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.5e-103 381.3 566 42.0
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 8.8e-101 372.1 655 36.0
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 4.1e-98 363.2 519 43.5
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.7e-97 360.5 712 35.0
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.2e-95 352.4 461 45.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 4.7e-94 349.7 661 36.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.4e-90 338.2 178 94.4
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.7e-89 334.0 372 51.1
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.3e-88 330.9 697 34.0
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.7e-83 313.5 296 56.4
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 1.1e-82 312.0 399 45.1
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.8e-78 297.4 476 40.3
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.1e-77 293.9 374 43.9
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 9.5e-71 272.3 687 30.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.4e-68 263.8 617 33.5
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.9e-64 250.4 394 40.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 8.1e-62 242.7 473 38.5
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 8.4e-59 232.6 365 41.1
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.1e-58 232.3 702 30.2
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.1e-58 232.3 807 28.1
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.5e-55 221.1 803 24.5
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 9.0e-53 212.6 354 39.8
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.4e-42 177.9 141 59.6
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.4e-42 177.9 228 46.9
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.9e-39 168.3 163 60.7
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.9e-37 159.8 251 36.7
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.0e-37 159.5 237 41.8
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-36 158.3 762 22.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.2e-34 151.0 245 39.2
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.8e-32 145.2 464 27.8
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 6.7e-32 143.3 198 39.9
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.7e-27 128.6 194 38.7
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.9e-26 125.2 453 28.0
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.8e-24 118.6 99 57.6
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-23 115.5 99 57.6
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 7.4e-23 113.2 151 41.1
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.1e-21 107.8 299 31.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.9e-19 101.3 203 30.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.5e-15 88.2 107 46.7
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.3e-15 87.4 144 38.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-14 85.9 367 23.7
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.1e-13 80.9 298 26.2
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.5e-10 71.6 233 30.0
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 7.2e-10 70.1 189 29.1
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.6e-09 67.8 56 57.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 4.7e-09 67.4 68 45.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 4.7e-09 67.4 394 21.1
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.9e-08 64.3 65 53.8
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 5.1e-08 63.9 129 34.9
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 2.6e-07 61.6 66 48.5
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.3e-06 59.3 119 36.1
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.7e-06 58.9 66 48.5
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.7e-06 58.9 181 32.6


User provided reference genes

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