Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1467.6 741 100.0
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1463.0 741 99.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1432.2 741 97.6
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1408.3 741 95.0
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1403.7 741 94.5
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1387.5 741 93.7
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1338.9 739 89.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1335.5 741 88.9
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 742 88.8
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1326.6 740 88.5
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 741 88.3
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1325.8 740 88.5
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 741 88.5
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 741 88.3
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 88.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 87.6
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 88.0
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1320.4 741 87.6
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 741 87.7
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 741 88.0
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 741 88.1
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 741 88.0
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1318.1 741 87.6
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 741 88.9
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1316.6 747 87.6
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1316.2 741 87.7
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 741 87.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 741 87.4
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1312.7 743 87.6
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1312.7 744 88.3
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1312.7 741 87.3
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1311.6 741 87.0
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 741 87.3
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1310.8 741 87.4
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 740 88.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 741 87.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 741 86.6
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 741 87.3
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 743 87.5
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 743 87.2
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 740 87.7
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 741 87.6
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 741 87.7
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 741 86.8
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 741 86.8
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 740 86.9
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 743 86.9
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 741 87.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 87.2
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 744 86.8
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 735 87.2
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 741 87.0
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 741 86.9
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 741 86.2
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 743 87.1
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 768 84.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 743 87.3
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 741 86.5
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 742 86.8
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 740 86.6
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 741 86.1
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 741 86.6
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 763 85.6
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 763 85.6
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 742 86.1
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1287.3 739 86.1
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 743 85.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 741 85.4
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1285.8 742 86.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 745 85.4
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 740 86.1
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1281.9 740 85.9
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 741 85.2
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 743 85.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 744 84.8
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 744 84.7
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 741 85.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 741 85.0
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1275.0 740 84.3
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 742 85.2
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1274.2 742 84.8
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1273.1 740 85.3
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 741 84.9
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1269.2 741 85.0
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 740 84.2
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 744 84.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1262.7 741 83.9
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 740 83.5
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 740 83.8
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 740 83.5
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 740 83.5
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1258.8 740 83.4
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 803 79.6
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1256.9 707 87.7
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1255.0 822 78.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1254.6 741 83.9
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1254.2 740 83.2
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1253.8 743 83.7
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1253.8 741 83.1
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1252.7 737 83.7
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1251.5 741 84.2
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 720 86.4
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 747 82.6
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1248.4 741 83.0
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1247.3 711 87.1
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1246.9 740 83.2
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1246.5 707 87.6
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1243.0 757 82.2
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1240.7 710 86.5
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1234.6 741 84.1
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1232.2 745 82.1
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1225.3 773 79.7
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1221.8 747 81.5
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1211.8 736 83.6
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1209.1 739 81.5
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1192.9 746 81.6
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1186.8 747 79.1
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1186.0 668 88.2
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1169.8 674 85.9
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1135.2 738 77.1
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1119.4 631 87.2
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1109.7 687 79.8
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1109.4 616 88.1
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1104.4 741 73.8
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1088.2 740 72.7
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 3.9e-310 1067.8 701 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.4e-296 1022.7 635 79.4
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.5e-240 834.7 667 62.7
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 5.7e-237 824.7 539 80.3
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 9.3e-232 807.4 699 60.1
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.1e-221 773.9 741 59.4
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.7e-220 770.0 739 59.1
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 5.5e-216 755.0 644 62.1
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.0e-206 724.2 523 72.3
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 1.2e-202 710.7 453 80.1
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 4.0e-198 695.7 464 75.9
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 5.3e-134 482.6 433 61.9
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 4.9e-132 476.1 263 88.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 8.2e-103 379.0 218 87.6
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 8.0e-82 309.3 578 36.5
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-75 287.7 152 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.0e-72 278.1 143 93.7
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.5e-59 235.3 171 73.1
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 9.9e-40 169.5 273 38.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.9e-39 167.9 84 92.9
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.5e-35 155.6 80 91.2
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.6e-34 151.0 98 72.4
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 6.0e-29 133.7 72 86.1
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 4.8e-26 124.0 71 84.5
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.9e-23 114.0 80 66.2
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.0e-20 104.8 108 54.6
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 8.7e-20 103.2 69 69.6
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 1.6e-18 99.0 69 68.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.8e-18 98.2 72 72.2
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 6.2e-18 97.1 85 56.5
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.4e-17 95.9 67 71.6
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.2e-16 92.8 67 68.7
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.0e-16 92.0 222 33.3
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 4.5e-16 90.9 69 60.9
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.3e-15 89.4 85 52.9
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 7.9e-13 80.1 71 67.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.8e-12 79.0 61 62.3
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 3.9e-12 77.8 47 78.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.8e-10 71.6 43 72.1
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 6.2e-10 70.5 58 65.5
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.4e-09 69.3 41 80.5
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.4e-08 64.7 33 90.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.3e-07 62.8 52 51.9
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.9e-06 58.9 47 55.3
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 3.2e-06 58.2 75 49.3
Sopen04g025080 Solanum pennellii HOM05D001730 ORTHO05D027964 5.5e-06 57.4 58 50.0
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.1e-06 57.0 46 54.3
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.3e-06 56.6 45 55.6


User provided reference genes

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