Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 0.0e+00 1816.2 929 100.0
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 0.0e+00 1785.4 929 98.6
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 0.0e+00 1760.0 929 97.1
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 0.0e+00 1531.2 946 84.6
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 0.0e+00 1509.6 969 81.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 0.0e+00 1192.9 815 78.3
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 2.6e-295 1018.8 674 79.7
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 8.5e-283 977.2 894 58.9
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 5.7e-279 964.5 981 55.5
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 5.7e-279 964.5 960 55.4
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 8.3e-278 960.7 995 55.0
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 7.0e-277 957.6 851 60.0
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.6e-273 946.4 993 55.1
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 2.3e-272 942.6 991 54.3
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.3e-270 936.8 952 56.6
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.7e-270 936.4 1002 53.3
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 1.8e-269 932.9 992 54.3
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 9.2e-269 930.6 965 54.6
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 3.0e-267 925.6 990 53.6
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 5.0e-267 924.9 992 54.0
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 2.0e-263 912.9 968 55.0
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 2.6e-263 912.5 1057 50.6
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 4.4e-263 911.8 1004 53.2
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 3.7e-262 908.7 918 55.8
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 8.3e-262 907.5 1003 53.1
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 1.1e-261 907.1 979 53.0
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 4.1e-261 905.2 945 55.3
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 4.1e-261 905.2 995 54.0
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 5.4e-261 904.8 970 52.8
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 7.8e-260 901.0 980 52.8
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 3.9e-259 898.7 849 58.5
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 2.9e-254 882.5 981 52.8
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.2e-252 877.1 922 55.3
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 5.1e-251 871.7 993 51.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 5.1e-251 871.7 966 51.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 5.1e-251 871.7 956 52.9
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 7.3e-250 867.8 938 53.5
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.6e-249 866.7 955 51.9
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.1e-249 866.3 956 53.2
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 4.7e-249 865.1 920 54.7
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.6e-247 859.4 855 55.4
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 1.7e-246 856.7 987 51.7
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.7e-246 856.7 851 54.8
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 1.9e-245 853.2 922 52.6
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.2e-244 850.5 868 54.1
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.3e-243 847.0 833 55.6
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.3e-243 847.0 871 54.2
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 6.6e-243 844.7 966 51.4
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.5e-242 843.6 913 51.5
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 5.6e-242 841.6 936 52.8
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.2e-241 840.5 848 53.9
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 3.6e-241 839.0 965 51.8
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 4.7e-241 838.6 934 51.8
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 5.2e-240 835.1 848 53.7
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 6.8e-240 834.7 931 52.2
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.4e-239 832.4 885 53.4
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.1e-237 827.4 1004 48.5
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 3.5e-236 822.4 916 51.2
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 1.7e-235 820.1 966 50.3
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 6.6e-235 818.1 957 49.5
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 7.3e-234 814.7 881 52.2
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.8e-233 812.8 902 50.7
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 4.8e-233 812.0 934 50.0
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 6.9e-232 808.1 960 49.9
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 6.9e-232 808.1 1001 48.4
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.9e-231 804.3 968 48.8
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.7e-230 803.5 749 58.3
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.2e-228 797.3 915 51.6
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.7e-228 796.2 991 47.9
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 4.6e-228 795.4 893 51.4
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.1e-227 792.0 967 50.6
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.5e-226 789.6 923 50.3
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 4.3e-226 788.9 951 49.9
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.6e-225 786.9 711 60.3
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 1.6e-225 786.9 935 49.4
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 2.8e-225 786.2 917 50.4
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 4.8e-225 785.4 970 48.9
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 1.2e-223 780.8 913 49.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.5e-223 780.4 924 49.9
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 2.2e-222 776.5 900 50.2
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 4.9e-222 775.4 911 50.3
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.9e-221 773.5 830 53.0
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 6.0e-220 768.5 931 49.4
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 3.9e-219 765.8 998 47.0
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 1.5e-218 763.8 920 48.5
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 3.7e-217 759.2 848 51.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 3.1e-216 756.1 886 49.5
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 3.1e-216 756.1 926 48.2
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 5.5e-213 745.3 939 47.7
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.1e-212 743.4 938 49.6
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 8.2e-209 731.5 874 48.2
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 7.6e-207 724.9 838 50.1
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 3.8e-206 722.6 815 50.6
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 5.9e-199 698.7 1000 45.1
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 3.9e-187 659.4 848 48.0
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 4.5e-183 646.0 689 54.1
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.6e-180 637.5 961 41.9
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.1e-176 624.8 612 55.7
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 2.5e-173 613.6 657 52.4
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.8e-171 607.4 708 50.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 7.2e-165 585.5 682 51.5
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 6.6e-158 562.4 1059 37.5
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.3e-157 559.7 900 40.0
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.7e-153 546.6 917 38.7
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.6e-138 497.3 1146 34.6
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 4.4e-138 496.5 871 38.2
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 8.4e-121 439.1 285 81.1
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.5e-114 418.3 476 48.3
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 6.4e-105 386.3 1125 29.9
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.6e-90 337.8 369 50.9
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 4.1e-83 313.9 209 83.3
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 6.3e-68 263.5 894 27.9
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 8.6e-49 199.9 375 33.9
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 8.9e-46 189.9 363 34.4
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.6e-45 188.3 860 23.4
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 6.6e-33 147.1 365 30.1
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 6.8e-30 137.1 135 52.6
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 4.1e-27 127.9 311 29.9
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.2e-22 110.9 387 25.1
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.7e-18 98.6 188 35.6
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 2.8e-15 88.6 87 54.0
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 5.2e-14 84.3 108 46.3
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 6.9e-06 57.4 110 32.7


User provided reference genes

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