Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.8e-205 718.4 362 100.0
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 5.4e-201 704.1 362 98.6
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 7.4e-198 693.7 362 96.7
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.4e-196 688.7 362 94.8
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.6e-195 685.3 362 93.6
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.3e-194 682.9 362 93.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.5e-158 563.1 380 74.2
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 5.9e-155 551.2 363 75.2
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 5.0e-154 548.1 364 74.5
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 3.2e-153 545.4 364 74.5
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 5.5e-153 544.7 364 74.5
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 3.6e-152 542.0 363 73.0
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.4e-151 540.0 364 73.9
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.8e-151 539.7 362 72.9
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 5.2e-151 538.1 364 73.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 6.7e-151 537.7 364 71.2
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 3.3e-150 535.4 363 71.9
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 4.4e-150 535.0 364 71.2
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 5.7e-150 534.6 364 72.8
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 3.7e-149 531.9 362 72.4
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.8e-149 531.6 364 72.0
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 4.8e-149 531.6 366 71.6
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 4.8e-149 531.6 363 72.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 8.2e-149 530.8 364 71.2
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 8.2e-149 530.8 363 71.3
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.8e-148 529.6 359 73.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 4.1e-148 528.5 385 67.8
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 5.3e-148 528.1 362 70.2
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 7.0e-148 527.7 367 71.1
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 7.0e-148 527.7 362 69.9
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 9.1e-148 527.3 359 72.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.2e-147 526.9 374 71.4
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.5e-147 525.4 363 71.1
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.0e-146 523.9 363 71.1
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.7e-146 523.1 357 70.9
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 1.7e-146 523.1 364 70.9
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 3.8e-146 521.9 363 71.1
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 8.5e-146 520.8 363 70.8
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-145 520.4 364 71.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 9.4e-145 517.3 362 70.4
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 2.7e-144 515.8 362 71.0
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.7e-144 515.8 363 69.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.7e-144 515.8 363 71.3
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.6e-144 515.4 363 70.2
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.6e-144 515.4 363 70.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 3.6e-144 515.4 365 71.5
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 4.7e-144 515.0 365 70.4
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.7e-144 515.0 367 70.3
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.0e-143 513.8 363 70.0
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 6.8e-143 511.1 364 69.8
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 6.8e-143 511.1 364 70.1
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.2e-142 510.4 364 69.5
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.6e-142 509.2 366 69.1
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 4.4e-142 508.4 364 69.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 5.7e-142 508.1 365 69.0
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 7.5e-142 507.7 364 69.8
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.7e-141 506.5 364 70.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.8e-141 505.8 364 69.8
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 70.6
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 9.1e-140 500.7 363 67.5
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 3.5e-139 498.8 363 71.3
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 3.5e-139 498.8 363 68.6
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 5.9e-139 498.0 362 68.2
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.7e-139 497.7 366 67.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 7.7e-139 497.7 364 69.5
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-138 496.1 337 72.1
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.9e-137 493.0 364 67.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 8.0e-136 487.6 369 65.9
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.8e-135 486.5 355 69.0
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.0e-135 485.3 307 75.6
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 5.2e-135 485.0 372 65.9
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.4e-134 481.9 391 62.9
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 4.5e-131 471.9 365 68.2
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 7.3e-129 464.5 362 63.8
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 3.6e-128 462.2 359 64.6
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.6e-128 462.2 362 63.5
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 8.0e-128 461.1 362 63.3
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.4e-127 460.3 364 66.2
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 4.0e-127 458.8 363 64.2
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-126 456.4 363 65.3
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 4.4e-126 455.3 364 64.0
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 9.8e-126 454.1 364 64.0
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 9.8e-126 454.1 362 63.3
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.7e-125 453.4 363 63.4
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.9e-125 451.8 353 64.0
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 8.3e-125 451.1 362 62.4
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 8.3e-125 451.1 370 63.5
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 2.4e-124 449.5 364 62.9
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 9.2e-124 447.6 318 69.2
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 1.6e-123 446.8 369 62.6
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.5e-123 445.7 389 59.9
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 4.6e-123 445.3 377 61.8
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-121 440.7 366 61.5
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 7.3e-121 438.0 333 67.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.0e-115 419.9 366 58.7
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.7e-114 416.8 302 68.2
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 3.9e-114 415.6 364 61.8
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.5e-113 412.9 277 72.9
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 3.3e-113 412.5 361 59.3
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.1e-112 409.8 362 60.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 8.9e-111 404.4 361 59.0
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.5e-110 403.7 340 61.8
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 5.8e-110 401.7 356 59.0
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-104 384.0 377 57.0
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.8e-104 382.9 381 50.9
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 9.6e-97 357.8 308 57.8
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.7e-96 355.5 243 71.2
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.4e-87 327.4 364 47.3
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.4e-84 316.6 385 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.4e-79 300.1 414 42.8
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 3.8e-77 292.7 215 67.9
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.1e-76 291.2 277 55.2
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.5e-70 270.8 364 46.7
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 5.5e-68 262.3 196 65.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 4.6e-67 259.2 169 75.1
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 7.9e-67 258.5 306 48.0
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 3.3e-65 253.1 169 72.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.7e-64 249.6 198 63.1
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-62 244.6 213 60.1
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.9e-57 227.3 195 62.6
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 2.9e-53 213.4 161 66.5
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.1e-52 211.5 122 86.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.7e-51 206.8 122 84.4
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 5.5e-44 182.6 137 67.9
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 1.6e-43 181.0 253 42.7
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 4.7e-43 179.5 200 50.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.4e-42 177.9 165 56.4
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 2.6e-41 173.7 307 36.8
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.3e-40 171.4 122 73.8
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 2.6e-38 163.7 136 61.8
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.8e-37 159.8 141 61.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 7.5e-33 145.6 199 39.2
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-30 137.1 136 53.7
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.0e-26 125.2 114 55.3
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.0e-26 123.6 72 81.9
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.4e-25 120.2 84 69.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.1e-23 112.1 72 80.6
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.6e-19 100.1 390 22.3
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.4e-18 98.2 77 59.7
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-15 86.3 133 34.6


User provided reference genes

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