Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 0.0e+00 1092.4 527 100.0
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 0.0e+00 1089.3 527 99.6
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 0.0e+00 1085.5 527 99.2
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 2.9e-296 1021.1 527 92.8
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 3.2e-295 1017.7 527 92.2
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 9.4e-295 1016.1 524 92.2
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 2.8e-278 961.4 528 86.7
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 2.6e-276 954.9 528 86.6
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 1.7e-275 952.2 531 85.9
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 2.4e-274 948.3 531 84.9
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 4.5e-273 944.1 539 84.2
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 2.1e-270 935.3 529 83.4
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 1.8e-269 932.2 533 84.6
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.8e-269 932.2 529 83.4
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 1.5e-268 929.1 532 84.2
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 7.5e-268 926.8 547 81.9
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 3.7e-267 924.5 538 82.0
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.1e-266 922.9 538 82.2
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.2e-265 919.5 539 81.6
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.0e-264 916.4 538 80.9
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 5.0e-264 914.1 538 80.7
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 6.6e-264 913.7 531 82.9
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.9e-263 912.1 540 80.7
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.9e-263 912.1 526 82.7
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 5.6e-263 910.6 536 81.2
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 9.5e-263 909.8 537 81.9
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.1e-262 908.7 531 82.3
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 2.8e-262 908.3 531 81.5
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 2.8e-262 908.3 534 81.1
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 1.1e-261 906.4 540 80.2
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 3.1e-261 904.8 545 79.4
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 5.2e-261 904.0 538 81.6
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 6.8e-261 903.7 540 80.7
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 6.8e-261 903.7 536 81.0
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 2.6e-260 901.7 532 80.8
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 5.8e-260 900.6 532 81.6
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 7.5e-260 900.2 535 80.9
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.7e-259 899.0 543 79.6
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 1.1e-258 896.3 516 81.4
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.4e-258 896.0 540 79.4
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.9e-258 895.6 541 78.9
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.9e-258 895.6 589 75.4
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 2.4e-258 895.2 533 80.3
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.4e-258 895.2 541 79.1
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 3.2e-258 894.8 538 79.4
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 3.2e-258 894.8 536 79.3
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 4.1e-258 894.4 516 81.2
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.2e-257 892.9 543 78.8
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 2.1e-257 892.1 535 79.3
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 3.5e-257 891.3 545 78.2
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 4.6e-257 891.0 522 82.0
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.0e-257 890.6 556 77.5
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.0e-257 890.6 569 76.1
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 7.8e-257 890.2 534 80.0
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 7.8e-257 890.2 536 78.5
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 1.7e-256 889.0 535 79.6
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.7e-256 889.0 491 83.7
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 2.3e-256 888.6 536 79.3
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 2.3e-256 888.6 536 79.3
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 3.0e-256 888.3 590 74.6
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 3.9e-256 887.9 520 81.0
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 8.6e-256 886.7 540 78.9
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 8.6e-256 886.7 532 78.6
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 1.1e-255 886.3 533 79.4
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 4.3e-255 884.4 538 78.3
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 1.6e-254 882.5 534 78.8
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 2.8e-254 881.7 529 80.5
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 3.6e-254 881.3 561 76.1
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.3e-253 878.6 525 80.8
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 3.1e-253 878.2 541 77.8
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 1.5e-252 875.9 534 78.8
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 7.5e-252 873.6 555 77.3
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.1e-250 869.8 539 76.8
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.1e-250 869.8 539 76.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 7.1e-250 867.1 469 86.8
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 2.7e-249 865.1 538 76.6
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 6.0e-249 864.0 536 76.9
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 1.0e-248 863.2 518 79.2
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 1.3e-248 862.8 536 76.7
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.5e-247 859.4 535 78.7
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 9.5e-247 856.7 546 76.4
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 1.1e-245 853.2 531 78.2
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 6.8e-245 850.5 534 77.9
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 2.6e-244 848.6 539 76.6
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 4.4e-244 847.8 522 79.3
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 5.8e-244 847.4 542 76.8
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 3.8e-243 844.7 530 77.0
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 4.9e-243 844.3 497 80.3
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 8.4e-243 843.6 534 76.8
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 3.2e-242 841.6 532 76.3
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 3.2e-242 841.6 530 77.2
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 1.1e-239 833.2 543 75.1
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.9e-239 832.4 515 76.9
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 4.0e-237 824.7 483 79.7
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 3.2e-234 815.1 557 72.7
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 4.2e-234 814.7 542 74.2
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 2.1e-233 812.4 542 74.2
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 3.5e-233 811.6 557 72.5
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-232 809.7 538 73.6
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.3e-232 809.7 532 73.5
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 5.4e-226 787.7 534 72.7
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.5e-223 779.6 533 70.9
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 4.8e-222 774.6 533 70.7
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.4e-220 768.5 477 75.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 5.1e-216 754.6 398 86.4
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 9.0e-213 743.8 426 80.5
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 1.3e-211 740.0 541 68.4
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 2.9e-211 738.8 524 69.3
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 3.1e-205 718.8 443 76.3
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 3.0e-200 702.2 437 77.6
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 2.5e-194 682.6 407 81.6
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 3.5e-188 662.1 398 77.6
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 3.2e-186 655.6 510 66.1
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 5.7e-183 644.8 332 89.2
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 5.4e-157 558.5 408 69.1
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 2.7e-156 556.2 468 57.1
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 5.0e-155 552.0 538 53.2
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 6.8e-152 541.6 344 74.4
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 3.7e-150 535.8 283 86.6
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.6e-137 493.8 346 69.4
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 1.2e-135 487.6 451 53.7
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 3.4e-135 486.1 428 57.9
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 2.4e-133 479.9 451 54.8
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 6.9e-120 435.3 329 66.9
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 7.9e-108 395.2 269 72.9
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 4.6e-92 342.8 181 86.7
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.4e-88 330.5 230 74.3
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.2e-87 328.2 182 85.2
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.6e-74 283.9 171 76.6
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 4.1e-56 223.4 135 73.3
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 1.0e-43 182.2 102 80.4
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.8e-43 181.4 115 75.7
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 3.4e-34 150.6 81 85.2
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 1.9e-29 134.8 67 92.5
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 8.6e-22 109.4 58 87.9
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.5e-21 107.8 60 83.3
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.5e-21 107.8 60 83.3
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 3.1e-19 100.9 53 86.8
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 1.1e-16 92.4 50 80.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 4.3e-13 80.5 78 52.6
CBR_g21303 Chara braunii HOM05D001677 ORTHO05D000002 7.1e-08 63.2 184 30.4


User provided reference genes

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