Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-64 249.6 124 100.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 5.3e-63 244.2 124 98.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-61 239.2 124 96.0
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-59 231.9 124 92.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-59 231.1 121 95.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.9e-58 228.0 123 88.6
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-57 226.1 117 94.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.7e-57 224.2 124 91.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-56 223.0 123 87.8
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-56 223.0 123 86.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-54 216.1 127 86.6
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-52 208.8 124 87.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.3e-52 206.8 123 82.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-50 202.2 123 78.9
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.7e-50 200.7 123 78.0
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.7e-50 200.7 123 78.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-49 199.1 102 98.0
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-47 193.0 123 75.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.4e-47 192.2 118 78.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.4e-47 192.2 123 75.6
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 4.1e-47 191.4 123 73.2
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 5.3e-47 191.0 123 74.8
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 6.9e-47 190.7 123 74.0
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-44 182.6 122 70.5
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.2e-44 181.8 123 73.2
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 9.4e-44 180.3 123 69.1
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.2e-43 179.9 123 68.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.6e-43 179.5 123 70.7
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.6e-43 179.5 123 69.9
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-43 179.1 93 93.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.8e-42 176.0 123 67.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.9e-42 174.9 123 68.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.9e-42 174.9 123 66.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 5.1e-42 174.5 123 66.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 6.7e-42 174.1 123 65.9
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 8.8e-42 173.7 123 66.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 8.8e-42 173.7 123 65.9
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 2.5e-41 172.2 124 68.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 2.5e-41 172.2 123 68.3
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 7.4e-41 170.6 123 65.0
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-40 169.5 118 70.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-40 169.5 118 70.3
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.2e-40 169.1 123 63.4
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.2e-40 169.1 123 63.4
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 2.8e-40 168.7 123 62.6
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 2.8e-40 168.7 123 63.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.8e-40 168.7 123 61.8
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.7e-40 168.3 118 66.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 3.7e-40 168.3 123 63.4
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 8.2e-40 167.2 123 63.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.4e-39 166.4 123 64.2
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.8e-39 166.0 123 61.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.4e-39 165.6 123 61.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.1e-39 165.2 123 61.0
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.1e-39 165.2 123 62.6
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.1e-39 165.2 123 63.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.1e-39 165.2 123 63.4
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.1e-39 164.9 123 63.4
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.9e-39 164.1 123 61.0
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 6.9e-39 164.1 118 65.3
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.1e-39 163.7 123 61.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.2e-38 163.3 123 61.0
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.2e-38 163.3 123 64.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.5e-38 162.9 123 64.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.5e-38 162.9 123 61.0
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.0e-38 162.5 141 56.7
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.0e-38 162.5 120 64.2
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.0e-38 162.5 123 62.6
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 2.0e-38 162.5 123 62.6
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.0e-38 162.5 118 63.6
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.6e-38 162.2 121 62.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.4e-38 161.8 123 61.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.4e-38 161.8 121 61.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 5.9e-38 161.0 120 61.7
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.9e-38 161.0 120 61.7
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 5.9e-38 161.0 121 60.3
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 5.9e-38 161.0 121 60.3
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 7.7e-38 160.6 123 61.0
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 7.7e-38 160.6 123 61.0
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.3e-37 159.8 124 61.3
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.7e-37 159.5 123 60.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.7e-37 159.5 121 65.3
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.8e-37 158.3 123 60.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.5e-37 157.5 123 62.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 6.5e-37 157.5 118 61.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.4e-36 156.4 123 61.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.9e-36 156.0 123 62.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.5e-36 155.6 123 61.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 4.2e-36 154.8 123 57.7
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.2e-36 154.8 123 61.8
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 5.5e-36 154.5 165 50.3
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.2e-36 154.1 115 60.9
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 7.2e-36 154.1 115 61.7
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 9.4e-36 153.7 123 61.0
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-35 153.3 123 61.0
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.6e-35 152.9 103 68.9
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-35 152.9 121 62.0
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-35 152.9 81 92.6
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.1e-35 152.5 123 60.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 3.6e-35 151.8 121 61.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 7.9e-35 150.6 123 59.3
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 7.9e-35 150.6 123 59.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.0e-34 150.2 121 60.3
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.8e-34 149.4 123 59.3
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.3e-34 149.1 123 58.5
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.3e-34 149.1 160 47.5
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.3e-34 149.1 160 47.5
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.3e-34 149.1 140 52.9
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.9e-34 148.3 121 58.7
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.9e-34 148.3 121 58.7
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.9e-34 148.3 121 58.7
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 3.9e-34 148.3 123 58.5
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.9e-34 148.3 123 58.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.9e-34 148.3 121 61.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 5.1e-34 147.9 120 60.0
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 5.1e-34 147.9 122 55.7
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 5.1e-34 147.9 121 59.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 8.8e-34 147.1 120 60.0
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.5e-33 146.4 124 55.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.0e-33 146.0 122 54.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.0e-33 146.0 143 53.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 3.3e-33 145.2 121 58.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.3e-32 143.3 121 60.3
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.7e-32 142.9 120 54.2
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.2e-32 142.5 82 84.1
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.8e-32 142.1 152 50.7
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 6.3e-32 141.0 117 58.1
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.4e-31 139.8 120 52.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.4e-31 139.8 108 63.0
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.4e-31 139.0 123 53.7
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 9.1e-31 137.1 108 61.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.2e-30 136.7 121 52.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.7e-30 134.0 115 61.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.7e-29 132.9 108 60.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-28 130.2 103 55.3
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-26 123.6 115 50.4
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.8e-26 122.9 73 76.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 8.8e-26 120.6 115 46.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 3.7e-24 115.2 123 43.9
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 9.1e-23 110.5 116 45.7
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-22 109.8 64 82.8
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.0e-22 109.4 115 47.8
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.7e-22 109.0 88 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 5.9e-22 107.8 124 41.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.5e-21 104.4 73 65.8
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 2.5e-20 102.4 120 42.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-19 97.4 51 90.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.0e-18 97.1 111 37.8
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.2e-13 79.3 49 75.5
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.5e-13 77.4 61 65.6
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.9e-12 76.3 49 69.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 9.4e-12 73.9 47 70.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.1e-11 72.8 73 47.9
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.6e-09 65.9 60 53.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.3e-08 60.8 41 70.7
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 7.7e-06 54.3 134 28.4


User provided reference genes

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