Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 9.3e-136 486.9 247 100.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.1e-99 364.0 302 68.9
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-81 306.2 169 92.9
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.0e-75 284.6 166 89.2
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.2e-74 283.9 171 82.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.8e-74 281.2 168 83.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-71 271.9 169 85.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-64 250.0 175 77.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 5.6e-64 248.4 163 74.8
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-63 247.3 138 90.6
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-63 246.9 163 74.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.6e-63 246.9 163 74.2
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.1e-63 244.6 139 90.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-62 243.0 124 98.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.4e-61 238.8 168 71.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.5e-61 238.0 165 72.1
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.7e-60 236.9 168 68.5
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-59 233.4 162 71.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 9.2e-59 231.1 176 65.9
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-58 230.7 174 66.1
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.1e-57 225.3 168 69.0
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 4.3e-56 222.2 165 66.7
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-55 220.7 138 80.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-55 219.9 117 92.3
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.3e-54 216.5 123 86.2
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.3e-54 216.5 175 62.3
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.0e-54 215.7 166 65.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.0e-54 215.7 165 63.6
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 5.2e-54 215.3 171 60.2
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.2e-53 214.2 171 60.8
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.4e-53 212.6 168 61.3
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 7.6e-53 211.5 168 60.7
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 9.9e-53 211.1 175 58.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.2e-52 209.9 171 60.8
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.9e-52 209.5 171 60.8
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.9e-52 209.5 171 56.7
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 3.7e-52 209.1 171 58.5
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.7e-52 209.1 171 58.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 4.9e-52 208.8 179 59.8
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.9e-52 208.8 163 61.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 8.4e-52 208.0 171 57.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.1e-51 207.6 171 58.5
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.9e-51 206.8 171 58.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.9e-51 206.8 171 58.5
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.9e-51 206.8 171 58.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.2e-51 206.1 171 56.7
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.1e-51 205.7 171 57.9
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.1e-51 205.7 130 80.0
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 9.2e-51 204.5 171 60.8
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.1e-50 203.4 163 57.7
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.1e-50 203.4 166 59.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.7e-50 203.0 171 56.7
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.6e-50 202.2 171 56.1
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.6e-50 202.2 166 57.8
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 6.0e-50 201.8 171 56.7
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 7.8e-50 201.4 168 58.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 7.8e-50 201.4 166 59.0
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 7.8e-50 201.4 165 58.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.0e-49 201.1 168 58.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.0e-49 201.1 171 55.0
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.3e-49 200.7 171 56.7
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.7e-49 200.3 169 56.2
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.3e-49 199.9 168 58.9
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.0e-49 199.5 171 54.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.0e-49 199.5 165 56.4
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 3.0e-49 199.5 166 57.8
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 3.0e-49 199.5 158 59.5
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 3.9e-49 199.1 171 56.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.9e-49 199.1 162 56.8
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.1e-49 198.7 168 58.3
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.6e-49 198.4 171 54.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 6.6e-49 198.4 168 57.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 8.6e-49 198.0 171 55.0
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 8.6e-49 198.0 171 55.0
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.1e-48 197.6 171 57.9
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-48 197.2 102 98.0
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.9e-48 196.8 168 57.1
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.5e-48 196.4 168 56.5
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.5e-48 196.4 171 54.4
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.3e-48 196.1 159 59.1
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.3e-48 196.1 159 59.1
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 4.3e-48 195.7 172 55.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.3e-48 195.7 171 54.4
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 4.3e-48 195.7 160 56.9
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 7.3e-48 194.9 163 55.8
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 9.6e-48 194.5 195 51.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.8e-47 193.0 167 55.7
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 3.6e-47 192.6 171 55.6
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.1e-46 191.0 168 56.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.1e-46 191.0 152 58.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 1.4e-46 190.7 163 55.8
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.4e-46 190.7 205 50.2
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.8e-46 190.3 171 54.4
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.2e-46 188.7 168 53.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 5.2e-46 188.7 168 54.8
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 5.2e-46 188.7 168 54.2
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 5.2e-46 188.7 168 54.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 5.2e-46 188.7 157 56.1
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 8.9e-46 188.0 170 54.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.2e-45 187.6 185 50.3
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.5e-45 187.2 168 55.4
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.0e-45 186.8 168 53.6
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.0e-45 186.8 208 46.6
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.0e-45 186.8 208 46.6
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.4e-45 186.0 168 54.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 3.4e-45 186.0 118 76.3
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 4.4e-45 185.7 168 54.2
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.9e-45 184.5 188 52.1
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.3e-44 184.1 171 52.0
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-44 183.3 171 53.2
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-44 183.3 171 53.2
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.2e-44 183.3 171 53.2
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.2e-44 183.3 162 52.5
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 3.8e-44 182.6 171 52.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 3.8e-44 182.6 171 55.6
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.4e-44 181.4 161 51.6
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 8.4e-44 181.4 171 52.6
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.1e-43 181.0 171 52.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.4e-43 180.6 162 51.2
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 5.4e-43 178.7 159 56.0
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 7.1e-43 178.3 133 67.7
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.2e-42 177.6 161 49.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.2e-42 177.6 143 60.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.6e-42 177.2 159 53.5
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.0e-41 174.5 152 52.6
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.0e-41 174.5 194 47.9
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.3e-41 173.3 164 59.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.3e-41 173.3 152 52.0
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 6.6e-41 171.8 171 48.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.3e-40 169.5 158 51.9
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.3e-40 168.3 96 88.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 8.1e-39 164.9 91 91.2
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.4e-38 164.1 171 49.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.2e-36 156.8 163 46.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.0e-34 148.7 139 52.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 8.7e-33 144.8 168 47.0
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.1e-30 137.9 117 57.3
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.4e-30 137.5 163 41.7
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.4e-30 136.7 146 42.5
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.2e-29 134.4 150 43.3
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.8e-29 132.1 94 70.2
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.2e-28 130.2 161 41.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.8e-28 129.4 166 38.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.4e-27 127.5 103 54.4
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 9.3e-27 124.8 164 39.0
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.3e-25 120.9 91 61.5
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.9e-24 117.1 155 35.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-24 117.1 73 74.0
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-24 116.7 111 60.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 9.6e-24 114.8 92 58.7
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 4.2e-19 99.4 73 64.4
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.3e-11 71.6 61 62.3
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.5e-10 69.7 73 46.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.3e-09 67.0 60 55.0
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-07 60.8 50 64.0
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-07 60.8 41 70.7
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 6.3e-07 58.9 159 26.4


User provided reference genes

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