Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 2.9e-51 204.9 103 100.0
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.6e-49 199.1 102 98.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 4.7e-49 197.6 102 98.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-47 191.8 102 94.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.3e-46 186.8 101 89.1
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.1e-45 184.5 102 91.2
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.2e-45 183.3 98 91.8
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-44 183.0 101 88.1
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.0e-44 180.6 99 92.9
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.0e-44 180.6 108 86.1
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.0e-44 180.6 102 85.3
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-43 179.1 102 89.2
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.1e-40 168.3 99 79.8
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 8.9e-40 166.8 101 79.2
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-39 165.2 101 81.2
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-39 165.2 101 78.2
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-39 165.2 101 78.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.7e-38 162.5 100 78.0
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.4e-38 160.6 101 85.1
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-37 159.5 101 76.2
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.4e-37 157.5 101 75.2
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.2e-37 156.8 101 75.2
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.6e-36 156.0 101 72.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.7e-36 155.2 101 73.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-35 152.9 100 72.0
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.3e-35 152.1 101 69.3
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.1e-34 149.8 100 71.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.3e-34 148.3 101 69.3
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 4.3e-34 147.9 101 67.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 7.3e-34 147.1 101 70.3
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 9.5e-34 146.7 101 70.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.8e-33 145.2 101 66.3
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.6e-33 144.8 101 67.3
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.2e-33 144.1 101 65.3
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.8e-32 142.5 101 66.3
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 3.1e-32 141.7 102 63.7
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 3.1e-32 141.7 101 65.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.2e-32 141.0 101 64.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 6.8e-32 140.6 100 64.0
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.8e-32 140.6 101 65.3
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 6.8e-32 140.6 101 65.3
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 8.9e-32 140.2 95 67.4
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 8.9e-32 140.2 101 61.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.2e-31 139.8 102 64.7
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.5e-31 139.4 101 62.4
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.0e-31 139.0 101 63.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.0e-31 139.0 96 66.7
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.6e-31 138.7 96 71.9
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.6e-31 138.7 96 71.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 3.4e-31 138.3 101 64.4
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.4e-31 138.3 101 64.4
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 3.4e-31 138.3 96 66.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.4e-31 137.9 101 61.4
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 5.8e-31 137.5 101 62.4
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 5.8e-31 137.5 101 65.3
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.5e-31 137.1 102 60.8
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 7.5e-31 137.1 101 63.4
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.9e-31 136.7 102 60.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 9.9e-31 136.7 102 66.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.9e-31 136.7 71 94.4
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.3e-30 136.3 101 63.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.3e-30 136.3 101 63.4
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.7e-30 136.0 102 59.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.2e-30 135.6 101 60.4
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.2e-30 135.6 102 59.8
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.9e-30 135.2 100 64.0
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 3.7e-30 134.8 101 60.4
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.7e-30 134.8 101 60.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.7e-30 134.8 101 60.4
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.7e-30 134.8 101 61.4
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.7e-30 134.8 99 62.6
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 4.9e-30 134.4 101 61.4
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 4.9e-30 134.4 101 60.4
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 4.9e-30 134.4 101 61.4
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 8.3e-30 133.7 101 62.4
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 8.3e-30 133.7 101 62.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 8.3e-30 133.7 101 62.4
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.3e-30 133.7 101 63.4
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.4e-29 132.9 99 59.6
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 2.4e-29 132.1 99 58.6
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.4e-29 132.1 99 58.6
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.2e-29 131.7 102 62.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 5.4e-29 131.0 101 60.4
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 5.4e-29 131.0 101 59.4
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.6e-28 129.4 101 58.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.6e-28 129.4 101 62.4
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.1e-28 129.0 101 58.4
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.1e-28 129.0 101 62.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.7e-28 128.6 101 60.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.7e-28 128.6 101 60.4
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 4.6e-28 127.9 101 61.4
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.6e-28 127.9 101 61.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 4.6e-28 127.9 99 59.6
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 6.0e-28 127.5 101 61.4
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 6.0e-28 127.5 101 60.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 7.8e-28 127.1 101 60.4
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 7.8e-28 127.1 101 59.4
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 7.8e-28 127.1 101 60.4
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 7.8e-28 127.1 101 60.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 7.8e-28 127.1 100 60.0
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.0e-27 126.7 101 60.4
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.0e-27 126.7 101 58.4
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.0e-27 126.7 101 57.4
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-27 126.3 100 60.0
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.3e-27 126.3 102 59.8
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.3e-27 125.6 101 59.4
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.3e-27 125.6 100 59.0
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 3.0e-27 125.2 102 58.8
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 3.0e-27 125.2 96 59.4
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.9e-27 124.8 121 53.7
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 5.1e-27 124.4 96 59.4
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 8.6e-27 123.6 102 57.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.1e-26 123.2 101 60.4
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.5e-26 122.9 101 53.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.3e-26 121.3 102 55.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 4.3e-26 121.3 102 55.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.3e-26 121.3 102 55.9
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 4.3e-26 121.3 138 46.4
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 4.3e-26 121.3 138 46.4
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 5.6e-26 120.9 100 55.0
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 7.3e-26 120.6 73 75.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.2e-25 119.8 143 46.9
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.2e-25 119.8 96 57.3
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.1e-25 119.0 100 54.0
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 3.6e-25 118.2 102 55.9
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 6.2e-25 117.5 102 54.9
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 8.1e-25 117.1 101 58.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.1e-24 116.7 101 52.5
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-24 116.7 102 53.9
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.4e-24 115.5 122 50.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.2e-24 114.4 101 51.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 5.2e-24 114.4 87 60.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.5e-23 112.8 102 50.0
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.0e-23 112.5 67 80.6
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 6.4e-22 107.5 59 89.8
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-21 106.7 64 81.2
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 4.2e-21 104.8 96 51.0
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.1e-21 104.0 60 85.0
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.7e-19 99.4 73 64.4
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.3e-19 99.0 93 44.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 3.3e-18 95.1 101 42.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.8e-17 92.0 97 46.4
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 1.4e-16 89.7 102 41.2
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 3.1e-16 88.6 94 43.6
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.0e-16 88.2 101 42.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 8.4e-14 80.5 66 59.1
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.1e-13 80.1 88 39.8
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-12 75.1 61 63.9
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.5e-10 69.7 73 46.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-08 63.5 60 53.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-06 55.5 29 89.7


User provided reference genes

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