Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 0.0e+00 1174.5 664 100.0
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.2e-304 1048.5 573 91.4
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.6e-291 1004.6 529 94.7
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 5.0e-285 984.2 580 84.3
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 1.1e-284 983.0 594 84.0
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.5e-284 982.6 580 84.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 9.4e-284 979.9 580 83.6
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 1.2e-281 973.0 579 82.9
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 9.7e-281 969.9 578 83.6
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.3e-280 969.5 580 82.8
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.7e-280 969.1 580 82.9
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.8e-280 968.4 580 83.8
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 2.8e-280 968.4 580 82.6
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.8e-280 968.4 580 82.6
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 3.7e-280 968.0 581 83.1
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.7e-280 968.0 580 83.6
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 4.1e-279 964.5 577 83.4
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 4.5e-278 961.1 571 83.4
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 5.5e-276 954.1 636 76.4
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.2e-275 953.0 580 81.4
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.6e-275 952.6 580 81.6
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 1.0e-274 949.9 580 82.4
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 4.0e-274 948.0 580 81.4
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 1.2e-273 946.4 580 81.4
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.3e-272 943.0 578 80.8
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.3e-272 943.0 557 83.5
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 2.2e-272 942.2 585 82.1
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 3.7e-272 941.4 557 83.3
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.7e-272 941.4 557 83.3
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 3.7e-272 941.4 559 82.1
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 1.1e-271 939.9 580 80.0
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.4e-271 939.5 569 81.2
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 4.1e-271 937.9 554 83.0
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 5.4e-271 937.6 580 81.7
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 5.4e-271 937.6 548 82.8
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 7.0e-271 937.2 580 79.7
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 9.1e-271 936.8 593 79.6
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.6e-270 936.0 561 82.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 2.7e-270 935.3 562 81.3
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 2.7e-270 935.3 614 76.5
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.0e-269 933.3 562 81.1
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.0e-269 933.3 576 80.0
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.7e-269 932.6 561 81.6
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 3.8e-269 931.4 561 81.6
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 5.0e-269 931.0 561 81.6
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 5.0e-269 931.0 560 81.8
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.5e-268 929.5 561 80.9
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.9e-268 929.1 561 81.8
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.5e-268 928.7 561 81.5
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.3e-268 928.3 562 82.6
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.2e-267 926.4 560 80.5
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 2.8e-267 925.2 504 89.1
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.6e-267 924.9 562 80.6
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 8.0e-267 923.7 536 83.0
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 8.0e-267 923.7 577 78.9
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.4e-266 922.9 583 80.3
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.8e-266 922.5 572 79.9
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 5.2e-266 921.0 563 80.6
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 6.8e-266 920.6 572 79.4
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 2.6e-265 918.7 563 80.5
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.4e-265 918.3 507 87.0
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 4.4e-265 917.9 567 79.4
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.3e-264 916.4 556 80.6
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 8.3e-264 913.7 579 79.6
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.1e-263 913.3 579 79.4
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 4.1e-263 911.4 544 82.0
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.6e-262 909.4 587 77.5
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 5.9e-262 907.5 617 76.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.9e-261 905.2 575 79.8
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.9e-261 904.8 568 80.3
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 5.0e-261 904.4 589 76.9
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 9.5e-260 900.2 577 76.3
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 1.0e-258 896.7 540 82.0
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.8e-258 896.0 567 79.5
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 5.2e-258 894.4 624 73.1
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 3.7e-256 888.3 565 79.5
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 2.4e-255 885.6 664 71.7
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 2.0e-254 882.5 550 78.4
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 3.9e-253 878.2 528 83.7
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.1e-252 876.7 611 73.8
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.9e-252 875.9 572 74.5
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 1.4e-250 869.8 569 76.1
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 1.8e-250 869.4 571 75.3
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.8e-250 867.5 577 74.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 8.9e-250 867.1 558 75.6
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 1.5e-249 866.3 579 77.0
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.4e-249 865.1 555 79.1
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 7.1e-247 857.4 472 86.9
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 9.5e-244 847.0 556 77.2
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.1e-242 842.0 592 73.5
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.3e-237 826.6 580 74.1
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 9.3e-231 803.9 570 71.1
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.3e-227 793.5 518 77.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.9e-226 787.7 563 72.6
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-225 786.9 476 83.0
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.7e-224 783.1 655 63.8
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.3e-219 766.9 569 65.7
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.8e-213 746.5 581 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 3.1e-210 735.7 550 66.2
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 6.0e-206 721.5 500 69.2
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.1e-205 718.4 579 68.7
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.7e-196 687.6 406 81.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 2.2e-184 649.8 344 88.7
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 2.0e-180 636.7 550 57.6
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 6.5e-176 621.7 397 83.1
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 9.4e-175 617.8 470 62.3
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 8.2e-171 604.7 472 61.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 8.8e-165 584.7 364 78.0
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.7e-152 543.9 399 72.2
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 5.8e-132 475.7 500 50.4
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.1e-127 461.5 494 54.7
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.0e-125 453.0 562 45.4
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 8.9e-117 425.2 252 77.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 4.8e-110 402.9 612 41.3
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.7e-104 384.4 214 87.4
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 6.2e-102 375.9 517 39.1
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 3.8e-99 366.7 263 72.6
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 8.4e-99 365.5 179 97.2
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.6e-76 290.8 234 67.5
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.4e-71 273.5 154 81.8
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.2e-58 230.7 172 66.9
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.1e-45 189.1 212 56.1
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.5e-44 183.7 98 85.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 7.5e-39 166.4 150 58.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.1e-33 148.3 96 76.0
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.1e-33 146.7 139 58.3
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.3e-32 144.8 127 61.4
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-23 115.5 76 78.9
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.1e-18 99.4 105 48.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.7e-17 94.0 128 43.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.9e-16 89.7 295 33.2
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.1e-11 73.9 181 38.1
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.5e-10 69.7 181 37.0
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.6e-07 61.6 91 49.5
arahy.Tifrunner.gnm1.ann1.9SD0MH Arachis hypogaea HOM05D005363 ORTHO05D015967 9.9e-07 59.7 50 50.0


User provided reference genes

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