Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g008380.3 Solanum lycopersicum HOM05D000131 ORTHO05D000086 4.0e-33 144.8 113 100.0
Sopen09g003200 Solanum pennellii HOM05D000131 ORTHO05D393331 4.0e-33 144.8 113 100.0
PGSC0003DMG400003871 Solanum tuberosum HOM05D000131 ORTHO05D000086 1.7e-31 139.4 113 91.2
CAN.G900.12 Capsicum annuum HOM05D000131 ORTHO05D000086 5.6e-27 124.4 113 64.6
Nitab4.5_0004195g0010 Nicotiana tabacum HOM05D000131 ORTHO05D000086 6.8e-25 117.5 112 62.5
Nitab4.5_0004117g0030 Nicotiana tabacum HOM05D000131 ORTHO05D000086 1.5e-24 116.3 112 62.5
Peaxi162Scf01629g00003 Petunia axillaris HOM05D000131 ORTHO05D000086 4.9e-23 111.3 111 56.8
SGA_v2.0_scaffold75G24829 Striga asiatica HOM05D000131 ORTHO05D000086 3.1e-17 92.0 57 77.2
Migut.L01717 Erythranthe guttata HOM05D000131 ORTHO05D000086 8.9e-17 90.5 54 75.9
Migut.J00448 Erythranthe guttata HOM05D000131 ORTHO05D000086 1.2e-16 90.1 58 77.6
SalBow3G2152 Salvia bowleyana HOM05D000131 ORTHO05D000086 1.5e-16 89.7 57 77.2
Lj2A119G61 Lonicera japonica HOM05D000131 ORTHO05D000086 2.6e-16 89.0 57 75.4
Rhsim04G0141700 Rhododendron simsii HOM05D000131 ORTHO05D000086 7.5e-16 87.4 57 75.4
CSS0004003 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D000086 1.3e-15 86.7 54 77.8
vmacro08787 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 1.3e-15 86.7 57 73.7
Cc06_g04480 Coffea canephora HOM05D000131 ORTHO05D000086 1.7e-15 86.3 54 75.9
DCAR_020808 Daucus carota HOM05D000131 ORTHO05D000086 2.9e-15 85.5 54 72.2
Oeu005041.1 Olea europaea HOM05D000131 ORTHO05D000086 2.9e-15 85.5 57 68.4
MSTRG.5773 Avicennia marina HOM05D000131 ORTHO05D000086 3.7e-15 85.1 57 70.2
Rhsim03G0089400 Rhododendron simsii HOM05D000131 ORTHO05D000086 3.7e-15 85.1 57 70.2
RhsimUnG0145300 Rhododendron simsii HOM05D000131 ORTHO05D000086 3.7e-15 85.1 57 70.2
CSS0020395 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D000086 4.9e-15 84.7 57 73.7
Actinidia31320 Actinidia chinensis HOM05D000131 ORTHO05D000086 2.4e-14 82.4 57 70.2
Actinidia32483 Actinidia chinensis HOM05D000131 ORTHO05D000086 4.1e-14 81.6 54 72.2
Ah.08g211500 Amaranthus hybridus HOM05D000131 ORTHO05D000086 4.1e-14 81.6 54 74.1
Dinv35808 Davidia involucrata HOM05D000131 ORTHO05D000086 4.1e-14 81.6 53 69.8
Hund25733 Selenicereus undatus HOM05D000131 ORTHO05D000086 4.1e-14 81.6 54 70.4
Dinv37331 Davidia involucrata HOM05D000131 ORTHO05D000086 5.4e-14 81.3 57 66.7
Hma1.2p1_0547F.1_g176610 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 5.4e-14 81.3 54 68.5
HanXRQChr02g0051211 Helianthus annuus HOM05D000131 ORTHO05D000086 2.7e-13 79.0 53 69.8
Lsat_1_v5_gn_6_28301 Lactuca sativa HOM05D000131 ORTHO05D000086 3.5e-13 78.6 53 67.9
HanXRQChr13g0400951 Helianthus annuus HOM05D000131 ORTHO05D000086 1.0e-12 77.0 53 67.9
Sc20g0005650 Simmondsia chinensis HOM05D000131 ORTHO05D000086 1.0e-12 77.0 53 69.8
Gohir.A01G212800 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.3e-12 75.9 59 66.1
Lalb_Chr20g0112541 Lupinus albus HOM05D000131 ORTHO05D000086 3.0e-12 75.5 58 63.8
Thecc.05G070700 Theobroma cacao HOM05D000131 ORTHO05D000086 3.0e-12 75.5 59 64.4
ECA233G4967 Erigeron canadensis HOM05D000131 ORTHO05D000086 3.9e-12 75.1 52 65.4
CiPaw.10G128300 Carya illinoinensis HOM05D000131 ORTHO05D000086 5.0e-12 74.7 59 66.1
AUR62041579 Chenopodium quinoa HOM05D000131 ORTHO05D000086 5.0e-12 74.7 54 64.8
GSVIVG01033671001 Vitis vinifera HOM05D000131 ORTHO05D000086 5.0e-12 74.7 52 67.3
Gohir.D01G201500 Gossypium hirsutum HOM05D000131 ORTHO05D000086 6.6e-12 74.3 59 64.4
Gorai.002G246200 Gossypium raimondii HOM05D000131 ORTHO05D000086 6.6e-12 74.3 59 64.4
BcaC07g39675 Brassica carinata HOM05D000131 ORTHO05D000086 8.6e-12 73.9 57 64.9
BcaC08g44625 Brassica carinata HOM05D000131 ORTHO05D000086 8.6e-12 73.9 57 64.9
C06p21030 Brassica napus HOM05D000131 ORTHO05D000086 8.6e-12 73.9 57 64.9
BolC6t37287H Brassica oleracea HOM05D000131 ORTHO05D000086 8.6e-12 73.9 57 64.9
AUR62026931 Chenopodium quinoa HOM05D000131 ORTHO05D000086 8.6e-12 73.9 54 64.8
A07p21420 Brassica napus HOM05D000131 ORTHO05D000086 1.1e-11 73.6 57 63.2
BraA07t29829Z Brassica rapa HOM05D000131 ORTHO05D000086 1.1e-11 73.6 57 63.2
Duzib128G1483 Durio zibethinus HOM05D000131 ORTHO05D000086 1.1e-11 73.6 59 62.7
Aa31LG10G8360 Aethionema arabicum HOM05D000131 ORTHO05D000086 1.5e-11 73.2 59 62.7
arahy.Tifrunner.gnm1.ann1.1WT5S9 Arachis hypogaea HOM05D000131 ORTHO05D000086 1.5e-11 73.2 58 62.1
arahy.Tifrunner.gnm1.ann1.G8D5NK Arachis hypogaea HOM05D000131 ORTHO05D000086 1.5e-11 73.2 58 62.1
EL10Ac7g16669 Beta vulgaris HOM05D000131 ORTHO05D000086 1.5e-11 73.2 54 66.7
BcaB01g00303 Brassica carinata HOM05D000131 ORTHO05D000086 2.5e-11 72.4 57 63.2
A09p46180 Brassica napus HOM05D000131 ORTHO05D000086 2.5e-11 72.4 57 63.2
BraA09t40082Z Brassica rapa HOM05D000131 ORTHO05D000086 2.5e-11 72.4 57 63.2
Cfa017646 Carpinus fangiana HOM05D000131 ORTHO05D000086 2.5e-11 72.4 59 64.4
Haze_20507 Corylus avellana HOM05D000131 ORTHO05D000086 2.5e-11 72.4 59 64.4
Manes.08G012400 Manihot esculenta HOM05D000131 ORTHO05D000086 2.5e-11 72.4 59 62.7
CANSAT80G0941 Cannabis sativa HOM05D000131 ORTHO05D000086 3.3e-11 72.0 59 64.4
Sp5g09140 Schrenkiella parvula HOM05D000131 ORTHO05D000086 3.3e-11 72.0 57 63.2
THA.LOC104807066 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 3.3e-11 72.0 54 68.5
arahy.Tifrunner.gnm1.ann1.4R8EXU Arachis hypogaea HOM05D000131 ORTHO05D000086 4.3e-11 71.6 58 62.1
arahy.Tifrunner.gnm1.ann1.9W6FMP Arachis hypogaea HOM05D000131 ORTHO05D000086 4.3e-11 71.6 58 62.1
BcaC07g39680 Brassica carinata HOM05D000131 ORTHO05D000086 4.3e-11 71.6 57 63.2
C08p28430 Brassica napus HOM05D000131 ORTHO05D000086 4.3e-11 71.6 57 63.2
BolC8t50451H Brassica oleracea HOM05D000131 ORTHO05D000086 4.3e-11 71.6 57 63.2
AL5G34070 Arabidopsis lyrata HOM05D000131 ORTHO05D000086 5.6e-11 71.2 57 63.2
AT3G53190 Arabidopsis thaliana HOM05D000131 ORTHO05D000086 5.6e-11 71.2 57 63.2
Carub.0005s1972 Capsella rubella HOM05D000131 ORTHO05D000086 7.3e-11 70.9 57 63.2
COL.COLO4_26920 Corchorus olitorius HOM05D000131 ORTHO05D000086 9.5e-11 70.5 56 62.5
unitig_578.g15791 Utricularia gibba HOM05D000131 ORTHO05D000086 9.5e-11 70.5 54 61.1
Duzib093G0928 Durio zibethinus HOM05D000131 ORTHO05D000086 1.2e-10 70.1 59 59.3
QL07p042724 Quercus lobata HOM05D000131 ORTHO05D000086 1.2e-10 70.1 59 62.7
CiPaw.09G169800 Carya illinoinensis HOM05D000131 ORTHO05D000086 1.6e-10 69.7 55 65.5
FvH4_6g16670 Fragaria vesca HOM05D000131 ORTHO05D000086 1.6e-10 69.7 59 62.7
FAN05G2264 Fragaria x ananassa HOM05D000131 ORTHO05D000086 1.6e-10 69.7 59 62.7
FAN05G2955 Fragaria x ananassa HOM05D000131 ORTHO05D000086 1.6e-10 69.7 59 62.7
FAN14G2752 Fragaria x ananassa HOM05D000131 ORTHO05D000086 1.6e-10 69.7 59 62.7
Glyma.03G185400 Glycine max HOM05D000131 ORTHO05D000086 1.6e-10 69.7 54 63.0
MD04G1089800 Malus domestica HOM05D000131 ORTHO05D000086 1.6e-10 69.7 56 62.5
RcHm_v2.0_Chr3g0470631 Rosa chinensis HOM05D000131 ORTHO05D000086 1.6e-10 69.7 59 62.7
TWI74G1014 Tripterygium wilfordii HOM05D000131 ORTHO05D000086 1.6e-10 69.7 59 61.0
MD12G1108300 Malus domestica HOM05D000131 ORTHO05D000086 2.1e-10 69.3 56 62.5
Cpa.g.sc92.98 Carica papaya HOM05D000131 ORTHO05D000086 2.8e-10 68.9 59 59.3
Potri.006G122000 Populus trichocarpa HOM05D000131 ORTHO05D000086 2.8e-10 68.9 59 57.6
Sabra06G0096200 Salix brachista HOM05D000131 ORTHO05D000086 4.7e-10 68.2 59 57.6
Atru.chr8.1760 Acer truncatum HOM05D000131 ORTHO05D000086 6.2e-10 67.8 59 57.6
THA.LOC104805202 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 6.2e-10 67.8 55 65.5
Phvul.001G180800 Phaseolus vulgaris HOM05D000131 ORTHO05D000086 8.1e-10 67.4 54 61.1
Prupe.7G126700 Prunus persica HOM05D000131 ORTHO05D000086 8.1e-10 67.4 59 57.6
PGR142G3847 Punica granatum HOM05D000131 ORTHO05D000086 8.1e-10 67.4 56 62.5
VMungo1383G1780 Vigna mungo HOM05D000131 ORTHO05D000086 8.1e-10 67.4 54 61.1
ClCG04G009420 Citrullus lanatus HOM05D000131 ORTHO05D000086 1.4e-09 66.6 59 57.6
MELO3C024477.2 Cucumis melo HOM05D000131 ORTHO05D000086 1.4e-09 66.6 59 57.6
CsaV3_6G040000 Cucumis sativus L. HOM05D000131 ORTHO05D000086 1.4e-09 66.6 59 57.6
Psat3g039880 Pisum sativum HOM05D000131 ORTHO05D000086 1.4e-09 66.6 54 61.1
FAN09G3729 Fragaria x ananassa HOM05D000131 ORTHO05D000086 1.8e-09 66.2 74 50.0
Sed0021680 Sechium edule HOM05D000131 ORTHO05D000086 1.8e-09 66.2 59 59.3
Ciclev10011635m.g Citrus clementina HOM05D000131 ORTHO05D000086 2.3e-09 65.9 59 55.9
Lj1g0018319 Lotus japonicus HOM05D000131 ORTHO05D000086 2.3e-09 65.9 54 59.3
Medtr7g102940 Medicago truncatula HOM05D000131 ORTHO05D000086 2.3e-09 65.9 54 59.3
CARHR163110 Cardamine hirsuta HOM05D000131 ORTHO05D000086 3.1e-09 65.5 42 73.8
Nn2g13845 Nelumbo nucifera HOM05D000131 ORTHO05D000086 3.1e-09 65.5 53 62.3
TPR.G32841 Trifolium pratense HOM05D000131 ORTHO05D000086 3.1e-09 65.5 54 59.3
Lj5g0002060 Lotus japonicus HOM05D000131 ORTHO05D000086 5.2e-09 64.7 58 56.9
Sed0007982 Sechium edule HOM05D000131 ORTHO05D000086 8.9e-09 63.9 59 54.2
TAR636G2300 Trochodendron aralioides HOM05D000131 ORTHO05D000086 4.4e-08 61.6 49 59.2
TAR633G2315 Trochodendron aralioides HOM05D000131 ORTHO05D000086 5.8e-08 61.2 51 56.9
Phvul.007G151200 Phaseolus vulgaris HOM05D000131 ORTHO05D000086 7.5e-08 60.8 58 53.4
VMungo1173G0001 Vigna mungo HOM05D000131 ORTHO05D000086 7.5e-08 60.8 58 53.4
Medtr1g062930 Medicago truncatula HOM05D000131 ORTHO05D000086 9.9e-08 60.5 58 51.7
Psat6g076040 Pisum sativum HOM05D000131 ORTHO05D000086 9.9e-08 60.5 58 50.0
Ca_08893_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 1.7e-07 59.7 58 51.7
Ca_26404_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 1.7e-07 59.7 42 64.3
Ca_30154_v3 Cicer arietinum L. HOM05D000131 ORTHO05D000086 1.7e-07 59.7 58 51.7
TPR.G21012 Trifolium pratense HOM05D000131 ORTHO05D000086 1.7e-07 59.7 58 50.0
Hund03738 Selenicereus undatus HOM05D000131 ORTHO05D000086 2.9e-07 58.9 46 60.9
ATR0088G043 Amborella trichopoda HOM05D000131 ORTHO05D000086 3.7e-07 58.5 60 55.0
MSTRG.27492 Avicennia marina HOM05D000131 ORTHO05D000086 3.7e-07 58.5 41 68.3
Nn6g35241 Nelumbo nucifera HOM05D000131 ORTHO05D000086 4.9e-07 58.2 53 54.7
Hma1.2p1_1384F.1_g279570 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 6.4e-07 57.8 42 64.3
Nitab4.5_0001278g0050 Nicotiana tabacum HOM05D000131 ORTHO05D000086 8.3e-07 57.4 42 64.3
Nitab4.5_0001359g0050 Nicotiana tabacum HOM05D000131 ORTHO05D000086 8.3e-07 57.4 42 64.3
AUR62029696 Chenopodium quinoa HOM05D000131 ORTHO05D000086 1.1e-06 57.0 46 58.7
MBI13_g34259_MAGBIO Magnolia biondii HOM05D000131 ORTHO05D000086 1.1e-06 57.0 49 61.2
CARHR164900 Cardamine hirsuta HOM05D000131 ORTHO05D000086 1.4e-06 56.6 41 63.4
AUR62006363 Chenopodium quinoa HOM05D000131 ORTHO05D000086 1.4e-06 56.6 46 58.7
Duzib128G0964 Durio zibethinus HOM05D000131 ORTHO05D000086 1.4e-06 56.6 53 49.1
Migut.F01700 Erythranthe guttata HOM05D000131 ORTHO05D000086 1.4e-06 56.6 42 64.3
Gohir.A05G292500 Gossypium hirsutum HOM05D000131 ORTHO05D000086 1.4e-06 56.6 53 50.9
Gohir.D05G293400 Gossypium hirsutum HOM05D000131 ORTHO05D000086 1.4e-06 56.6 53 50.9
Gorai.009G309900 Gossypium raimondii HOM05D000131 ORTHO05D000086 1.4e-06 56.6 53 50.9
Hma1.2p1_0117F.1_g056330 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 1.4e-06 56.6 42 61.9
Peaxi162Scf00253g00324 Petunia axillaris HOM05D000131 ORTHO05D000086 1.4e-06 56.6 42 64.3
Solyc11g008140.3 Solanum lycopersicum HOM05D000131 ORTHO05D000086 1.4e-06 56.6 41 68.3
TAR565G0002 Trochodendron aralioides HOM05D000131 ORTHO05D000086 1.4e-06 56.6 46 60.9
TAR636G0306 Trochodendron aralioides HOM05D000131 ORTHO05D000086 1.4e-06 56.6 46 60.9
Eucgr.G02748 Eucalyptus grandis HOM05D000131 ORTHO05D000086 1.9e-06 56.2 50 58.0
Hma1.2p1_0145F.1_g065140 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 1.9e-06 56.2 42 61.9
Hma1.2p1_0145F.1_g065190 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 1.9e-06 56.2 42 61.9
Hma1.2p1_0145F.1_g065195 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 1.9e-06 56.2 42 61.9
Nitab4.5_0002285g0060 Nicotiana tabacum HOM05D000131 ORTHO05D000086 1.9e-06 56.2 41 68.3
Nitab4.5_0004987g0030 Nicotiana tabacum HOM05D000131 ORTHO05D000086 1.9e-06 56.2 41 68.3
ECA233G5757 Erigeron canadensis HOM05D000131 ORTHO05D000086 2.4e-06 55.8 51 52.9
Hund19792 Selenicereus undatus HOM05D000131 ORTHO05D000086 2.4e-06 55.8 46 60.9
Sopen11g003950 Solanum pennellii HOM05D000131 ORTHO05D000086 2.4e-06 55.8 41 68.3
TAR565G0001 Trochodendron aralioides HOM05D000131 ORTHO05D000086 2.4e-06 55.8 50 58.0
BcaC08g44707 Brassica carinata HOM05D000131 ORTHO05D000086 3.2e-06 55.5 41 65.9
C06p22420 Brassica napus HOM05D000131 ORTHO05D000086 3.2e-06 55.5 41 65.9
BolC6t37428H Brassica oleracea HOM05D000131 ORTHO05D000086 3.2e-06 55.5 41 65.9
SGA_v2.0_scaffold2G01345 Striga asiatica HOM05D000131 ORTHO05D000086 3.2e-06 55.5 42 61.9
Ah.15g090180 Amaranthus hybridus HOM05D000131 ORTHO05D002239 4.1e-06 55.1 45 57.8
HanXRQChr09g0248191 Helianthus annuus HOM05D000131 ORTHO05D000086 4.1e-06 55.1 41 61.0
Peaxi162Scf00145g00220 Petunia axillaris HOM05D000131 ORTHO05D000086 4.1e-06 55.1 41 65.9
Hund22306 Selenicereus undatus HOM05D000131 ORTHO05D000086 4.1e-06 55.1 41 61.0
GSVIVG01016209001 Vitis vinifera HOM05D000131 ORTHO05D000086 4.1e-06 55.1 42 61.9
BcaB02g07713 Brassica carinata HOM05D000131 ORTHO05D000086 5.4e-06 54.7 41 63.4
A07p22330 Brassica napus HOM05D000131 ORTHO05D000086 5.4e-06 54.7 41 63.4
BraA07t29910Z Brassica rapa HOM05D000131 ORTHO05D000086 5.4e-06 54.7 41 63.4
CiPaw.01G266800 Carya illinoinensis HOM05D000131 ORTHO05D000086 5.4e-06 54.7 57 50.9
Glyma.13G145900 Glycine max HOM05D000131 ORTHO05D000086 5.4e-06 54.7 58 46.6
Lj3C937G5 Lonicera japonica HOM05D000131 ORTHO05D000086 5.4e-06 54.7 42 61.9
Sp5g07500 Schrenkiella parvula HOM05D000131 ORTHO05D000086 5.4e-06 54.7 41 65.9
Solyc03g071570.3 Solanum lycopersicum HOM05D000131 ORTHO05D000086 5.4e-06 54.7 42 61.9
Sopen03g019850 Solanum pennellii HOM05D000131 ORTHO05D000086 5.4e-06 54.7 42 61.9
Aa31sc43G60 Aethionema arabicum HOM05D000131 ORTHO05D000086 7.1e-06 54.3 41 63.4
Cc00_g27280 Coffea canephora HOM05D000131 ORTHO05D000086 7.1e-06 54.3 42 59.5
Oeu046645.2 Olea europaea HOM05D000131 ORTHO05D000086 7.1e-06 54.3 51 52.9
Potri.010G229000 Populus trichocarpa HOM05D000131 ORTHO05D000086 7.1e-06 54.3 50 56.0
AL5G36030 Arabidopsis lyrata HOM05D000131 ORTHO05D000086 9.2e-06 53.9 41 61.0
AT3G54920 Arabidopsis thaliana HOM05D000131 ORTHO05D000086 9.2e-06 53.9 41 61.0
Dinv36376 Davidia involucrata HOM05D000131 ORTHO05D000086 9.2e-06 53.9 42 59.5
Gohir.D06G176300 Gossypium hirsutum HOM05D000131 ORTHO05D000086 9.2e-06 53.9 53 50.9
Gorai.010G207200 Gossypium raimondii HOM05D000131 ORTHO05D000086 9.2e-06 53.9 53 50.9
Peaxi162Scf00176g01639 Petunia axillaris HOM05D000131 ORTHO05D000086 9.2e-06 53.9 62 51.6
SHI08862 Sapria himalayana HOM05D000131 ORTHO05D000086 9.2e-06 53.9 50 50.0
PGSC0003DMG400031065 Solanum tuberosum HOM05D000131 ORTHO05D000086 9.2e-06 53.9 42 69.0


User provided reference genes

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