Gene: AT3G54920

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54920
  • Transcript Identifier AT3G54920.1
  • Gene Type Coding gene
  • Location Chr3 : 20345311-20348477 : positive

Gene Family Information

  • ID HOM05D000131
  • #Genes/#Species 2694/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54920.1
  • symbol PMR6
  • full_name powdery mildew resistant 6
  • uniprot Q93Z04

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description powdery mildew resistant 6 (PMR6); CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G04310.1); Has 2753 Blast hits to 2553 proteins in 415 species: Archae - 3; Bacteria - 1039; Metazoa - 313; Fungi - 409; Plants - 814; Viruses - 7; Other Eukaryotes - 168 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045490
IEA
Gene Ontologypectin catabolic process
GO:0042547
IMP
Gene Ontologycell wall modification involved in multidimensional cell growth1
GO:0098542
IMP
Gene Ontologydefense response to other organism1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
GOA Databaselyase activity
GO:0016829
ISS
Gene Ontologylyase activity
GO:0030570
IEA
GOA Databasepectate lyase activity
GO:0030570
ISS
Gene Ontologypectate lyase activity1
GO:0030570
IEA
InterPropectate lyase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0005886
ISM
Gene Ontologyplasma membrane
GO:0031225
IEA
GOA Databaseanchored component of membrane
GO:0031225
TAS
Gene Ontologyanchored component of membrane2
GO:0046658
ISS
Gene Ontologyanchored component of plasma membrane1
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011050 Pectin lyase fold/virulence factor
IPR018082 AmbAllergen
IPR002022 Pectate lyase
IPR012334 Pectin lyase fold
IPR045032 Pectin lyase family
Mapman id Description
21.3.5.2 Cell wall organisation.pectin.modification and degradation.pectate lyase