Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 0.0e+00 1219.9 606 100.0
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 0.0e+00 1163.3 606 96.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.6e-290 1001.1 665 79.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.7e-285 984.9 665 78.3
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.3e-284 982.6 665 78.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 4.0e-265 917.9 650 75.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 4.9e-255 884.4 692 67.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.1e-241 838.6 694 62.7
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-239 833.6 694 62.5
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.6e-168 595.5 646 50.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.6e-167 591.7 686 48.3
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.3e-166 589.0 703 48.1
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 9.8e-163 577.8 676 48.2
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.5e-158 563.9 716 46.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.1e-157 560.1 659 47.8
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 6.8e-156 555.1 661 47.7
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.4e-155 552.4 698 46.1
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.9e-155 551.2 732 44.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 3.7e-154 549.3 666 46.8
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.4e-153 546.6 646 48.0
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.2e-152 544.3 712 45.1
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.2e-152 544.3 664 45.3
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.1e-152 543.5 714 44.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.6e-152 542.3 654 46.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.3e-151 540.8 712 46.5
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.0e-151 539.7 710 46.5
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 3.9e-151 539.3 701 43.9
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.9e-151 539.3 711 44.2
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 6.6e-151 538.5 724 43.5
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 8.6e-151 538.1 692 45.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.1e-149 533.5 700 45.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 3.1e-148 529.6 713 44.2
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 6.8e-148 528.5 716 44.8
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 8.9e-148 528.1 713 44.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.4e-147 526.2 667 45.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 7.6e-147 525.0 710 43.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.9e-146 523.1 702 45.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.9e-145 520.4 702 44.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 3.2e-145 519.6 666 45.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 7.1e-145 518.5 699 44.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 7.1e-145 518.5 685 44.1
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 9.3e-145 518.1 656 45.7
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.3e-143 514.2 723 43.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.7e-143 513.8 704 42.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.6e-143 511.9 693 43.9
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.5e-142 510.8 731 42.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 3.3e-142 509.6 707 42.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 6.2e-141 505.4 732 42.8
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.0e-140 502.7 586 47.6
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.0e-140 502.7 697 44.6
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.0e-140 501.5 628 44.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.0e-139 500.4 678 42.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.4e-139 499.2 663 44.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 5.8e-139 498.8 722 41.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 9.9e-139 498.0 848 37.7
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.1e-137 494.6 708 43.1
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.4e-137 493.4 688 41.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 5.4e-137 492.3 598 46.8
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.2e-136 491.1 592 47.3
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 4.6e-136 489.2 704 43.2
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.9e-136 488.4 704 43.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 5.1e-135 485.7 710 42.4
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 8.7e-135 485.0 589 48.2
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.1e-134 484.6 724 40.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.5e-134 483.4 713 42.1
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.6e-133 479.6 717 42.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 3.6e-133 479.6 668 42.5
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.4e-132 477.6 723 39.8
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.4e-132 476.9 662 42.7
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.1e-132 476.5 708 43.1
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.0e-131 473.8 724 40.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.8e-131 472.2 671 44.0
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.4e-129 466.8 657 42.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.2e-128 464.5 698 40.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.5e-128 463.0 663 41.0
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.6e-128 462.6 679 42.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.5e-126 457.6 702 42.5
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.3e-125 454.5 481 53.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.3e-125 454.5 676 42.0
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.8e-125 453.4 622 42.4
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 3.7e-125 453.0 722 41.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 5.8e-123 445.7 537 46.0
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 9.3e-121 438.3 685 41.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-117 427.9 708 41.2
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.1e-117 427.2 681 39.8
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.1e-116 424.9 696 39.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.0e-116 421.8 682 39.9
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-115 421.4 528 47.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.5e-115 421.0 524 46.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.5e-115 419.5 513 47.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.4e-114 415.2 599 43.1
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.1e-112 410.6 403 54.3
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.6e-112 409.5 679 40.1
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.0e-111 408.3 672 39.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-111 407.1 702 39.2
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.4e-110 402.1 684 38.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 9.7e-110 401.7 583 43.6
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.3e-108 396.0 675 40.6
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.2e-107 394.8 403 50.9
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.7e-106 391.0 698 36.5
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.8e-106 389.8 676 40.2
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 6.5e-106 389.0 669 40.4
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-105 388.3 669 39.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.1e-105 388.3 671 39.6
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.4e-105 387.9 667 40.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.3e-103 380.6 564 41.8
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.7e-98 364.4 513 43.3
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.7e-98 364.4 629 37.8
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.9e-98 363.6 622 38.4
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 9.4e-97 358.6 619 39.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.3e-92 342.8 460 44.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.0e-90 338.6 178 94.9
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.3e-90 338.2 531 37.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.1e-88 329.3 400 46.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 8.8e-87 325.5 296 58.4
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.4e-84 318.2 351 51.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.8e-84 317.8 710 32.4
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-81 307.8 475 41.9
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.4e-78 297.0 701 31.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.7e-72 277.3 369 43.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.8e-70 268.9 512 35.9
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.1e-64 251.1 551 31.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.7e-64 250.0 396 40.7
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.7e-61 241.5 364 41.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.6e-59 235.0 442 39.6
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 4.4e-54 216.9 666 29.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.1e-52 210.3 620 26.9
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 5.4e-52 209.9 351 40.5
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.7e-48 196.8 705 27.1
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.2e-40 172.2 141 59.6
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.9e-36 158.3 241 40.7
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 9.2e-36 156.0 458 30.6
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-33 148.7 579 23.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.2e-32 145.6 206 44.2
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.2e-30 139.0 226 35.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.6e-27 127.1 236 34.7
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-25 122.1 99 59.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.1e-24 118.2 149 49.7
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 2.8e-24 117.9 99 59.6
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 9.0e-23 112.8 380 29.5
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.7e-21 108.6 197 32.0
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.4e-21 106.7 297 32.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.4e-20 105.5 147 38.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 5.4e-20 103.6 192 34.4
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.9e-18 97.4 205 32.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.8e-16 90.5 98 49.0
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.1e-12 76.6 232 30.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.6e-11 75.5 202 29.2
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.6e-11 73.9 132 37.9
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.3e-10 71.6 284 23.9
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.7e-08 64.3 191 28.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 4.8e-08 63.9 56 53.6
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.8e-08 63.9 65 53.8
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 4.5e-06 57.4 57 45.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 5.8e-06 57.0 111 29.7
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 1.0e-05 56.2 50 52.0


User provided reference genes

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