Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.4e-264 916.0 555 100.0
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.0e-262 907.5 453 99.3
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 3.8e-238 828.2 446 92.6
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 2.3e-230 802.4 423 90.1
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 7.8e-223 777.3 414 87.0
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.5e-221 773.1 416 87.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 2.1e-220 769.2 451 80.0
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.1e-220 769.2 414 86.2
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 6.8e-219 764.2 416 85.6
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.5e-218 763.1 428 83.9
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 3.4e-218 761.9 415 83.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.1e-216 756.9 419 83.1
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 5.4e-216 754.6 417 84.2
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 9.2e-216 753.8 450 80.0
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.5e-215 751.9 420 85.0
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 5.9e-215 751.1 420 84.8
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.0e-214 750.4 417 83.9
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.0e-214 750.4 461 77.9
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.3e-214 750.0 447 82.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.7e-214 749.6 416 85.6
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.3e-214 749.2 415 83.1
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.1e-213 746.9 420 82.6
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.5e-213 746.5 453 78.8
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.9e-213 746.1 418 82.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 2.5e-213 745.7 417 83.2
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 3.3e-213 745.3 416 83.4
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 5.6e-213 744.6 430 81.4
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 5.6e-213 744.6 420 82.4
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 7.3e-213 744.2 450 77.6
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 9.5e-213 743.8 419 82.6
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.6e-212 743.0 432 83.1
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.6e-212 743.0 419 82.3
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.8e-212 742.3 420 82.6
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 8.0e-212 740.7 420 82.4
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.4e-211 740.0 414 84.5
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.2e-210 736.9 419 82.1
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 5.8e-210 734.6 421 82.4
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 7.5e-210 734.2 416 82.7
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.3e-209 733.4 423 83.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-209 733.4 423 83.2
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.7e-209 733.0 423 83.5
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.2e-209 732.6 424 81.6
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.2e-209 732.6 424 81.6
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.2e-209 732.6 422 82.7
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 2.9e-209 732.3 420 81.9
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.9e-209 732.3 417 82.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 6.4e-209 731.1 415 81.2
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.3e-209 730.7 422 83.2
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.1e-208 730.3 424 83.0
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.9e-208 729.6 456 77.0
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.9e-208 729.6 421 81.2
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 4.1e-208 728.4 435 80.2
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 3.5e-207 725.3 389 86.1
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 7.8e-207 724.2 445 80.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.3e-206 723.4 420 80.7
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.7e-206 723.0 455 76.3
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.3e-206 722.6 387 86.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.9e-206 721.8 426 80.5
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.3e-203 712.6 455 76.0
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 9.9e-202 707.2 456 73.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 9.9e-202 707.2 416 82.2
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.2e-199 700.3 420 79.5
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.1e-197 693.7 423 77.3
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 4.3e-197 691.8 421 77.2
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 8.1e-196 687.6 422 78.9
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.0e-194 682.9 421 79.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 2.6e-194 682.6 421 79.1
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 3.4e-194 682.2 387 82.9
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 4.4e-194 681.8 427 76.8
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.3e-193 680.2 428 77.3
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 8.4e-193 677.6 415 76.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 4.6e-191 671.8 419 76.1
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 4.6e-191 671.8 421 76.5
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.9e-189 666.4 456 72.1
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.8e-187 659.8 349 88.3
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 9.9e-186 654.1 421 75.8
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-185 653.7 417 75.1
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.7e-185 653.3 420 74.3
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.7e-185 653.3 420 74.0
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 6.4e-185 651.4 419 74.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 2.4e-184 649.4 423 74.0
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 9.3e-184 647.5 422 73.7
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.1e-183 646.4 419 74.0
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 1.7e-182 643.3 418 73.4
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.7e-182 643.3 434 71.9
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 3.0e-182 642.5 422 73.2
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.1e-181 640.6 434 71.7
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 3.6e-180 635.6 427 71.0
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 6.2e-180 634.8 430 71.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.2e-180 634.8 386 80.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 8.1e-180 634.4 378 79.4
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.9e-177 625.9 418 72.2
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 3.8e-177 625.5 420 72.4
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.3e-174 617.1 363 80.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 2.3e-174 616.3 385 76.6
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 3.0e-174 615.9 426 70.9
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.9e-174 615.5 390 76.4
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 6.7e-174 614.8 420 71.2
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.3e-172 610.5 458 67.7
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.6e-172 610.1 390 74.6
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.1e-168 597.4 419 70.9
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 9.3e-168 594.3 473 64.9
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.1e-165 587.4 414 68.4
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 9.6e-165 584.3 451 63.4
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.1e-164 583.2 395 70.9
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.3e-158 563.9 319 81.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.8e-158 563.5 314 84.1
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 5.1e-158 562.0 306 84.3
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.6e-154 549.7 341 76.5
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 3.1e-139 499.6 335 71.9
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.3e-133 479.6 311 74.3
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.8e-132 476.5 296 77.7
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.0e-129 465.7 427 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 5.3e-123 445.7 404 54.5
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.2e-122 444.5 450 51.3
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 1.2e-122 444.5 326 67.2
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 3.1e-115 419.9 363 56.5
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 4.2e-112 409.5 323 61.6
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 5.4e-107 392.5 218 83.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 3.5e-106 389.8 327 54.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.4e-102 377.9 190 90.0
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 9.2e-99 365.2 231 79.7
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 7.8e-90 335.5 423 46.6
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 9.9e-85 318.5 259 62.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 3.1e-70 270.4 254 58.3
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.9e-59 234.6 151 76.2
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.3e-49 201.1 114 82.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 8.2e-47 192.6 135 72.6
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 8.2e-47 192.6 167 62.3
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.0e-33 149.1 289 34.3
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 3.9e-33 147.1 107 70.1
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.1e-27 129.0 269 34.6
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-27 128.6 79 77.2
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.2e-27 127.5 92 67.4
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 4.5e-21 107.1 319 29.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.2e-18 99.0 80 61.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.6e-16 91.3 52 78.8
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.3e-12 79.0 83 53.0
PGSC0003DMG400001826 Solanum tuberosum HOM05D005140 ORTHO05D006288 4.7e-10 70.5 58 91.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.0e-09 67.8 29 93.1


User provided reference genes

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