Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 9.7e-127 456.8 231 100.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 8.2e-126 453.8 231 98.7
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.4e-122 443.0 231 97.0
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 6.5e-99 364.4 224 83.5
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.4e-88 330.1 188 86.2
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.8e-85 319.7 232 70.7
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.2e-79 300.4 232 69.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 7.5e-79 297.7 232 66.4
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.3e-78 297.0 232 67.7
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 2.8e-78 295.8 233 67.0
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 3.7e-78 295.4 238 66.4
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 4.9e-78 295.0 232 68.1
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 4.9e-78 295.0 232 67.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.4e-77 293.5 233 66.1
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 5.4e-77 291.6 233 66.5
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 5.4e-77 291.6 234 65.8
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.6e-76 290.0 238 64.3
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.7e-76 289.3 233 64.8
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 5.9e-76 288.1 235 65.1
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.0e-75 287.3 233 63.5
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.0e-75 287.3 233 66.1
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 3.8e-75 285.4 238 64.3
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 3.8e-75 285.4 233 63.5
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-74 283.9 233 64.8
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.1e-74 283.9 238 64.7
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 3.3e-74 282.3 233 62.2
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.3e-74 282.0 232 65.5
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.6e-73 280.0 233 64.4
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.6e-73 278.9 233 64.8
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 3.6e-73 278.9 233 63.9
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.6e-73 278.9 161 85.7
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 3.6e-73 278.9 235 64.3
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 4.7e-73 278.5 231 63.2
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.7e-73 278.5 233 64.8
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 4.7e-73 278.5 237 62.0
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 6.1e-73 278.1 235 63.8
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.0e-73 277.7 238 63.4
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 8.0e-73 277.7 232 62.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.0e-72 277.3 233 63.9
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 3.0e-72 275.8 234 62.8
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.2e-72 275.0 238 63.0
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 8.9e-72 274.2 242 62.4
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 8.9e-72 274.2 242 62.4
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.9e-72 274.2 238 63.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.2e-71 273.9 233 63.1
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.2e-71 273.9 237 60.8
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.5e-71 273.5 233 63.5
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.0e-71 273.1 232 63.8
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.6e-71 272.7 233 63.1
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 3.4e-71 272.3 232 65.1
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.4e-71 271.9 237 63.7
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.3e-70 270.4 239 59.8
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.3e-70 270.4 235 61.7
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.9e-70 269.2 211 65.9
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.3e-70 267.7 235 61.3
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.9e-69 266.5 233 63.5
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.9e-69 266.5 235 64.3
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 7.0e-69 264.6 233 63.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.7e-68 262.7 234 59.8
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 3.5e-68 262.3 235 62.1
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 3.5e-68 262.3 240 59.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.5e-68 262.3 278 55.4
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-67 260.8 241 59.8
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.5e-66 256.9 235 60.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.9e-66 256.5 234 60.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 2.5e-66 256.1 232 60.8
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 4.3e-66 255.4 236 60.6
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 9.5e-66 254.2 207 63.8
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.2e-65 253.8 239 59.4
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 2.8e-65 252.7 242 57.0
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 6.2e-65 251.5 239 58.2
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 6.2e-65 251.5 238 58.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.4e-64 250.4 242 56.6
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-64 249.2 242 57.0
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 5.2e-64 248.4 223 60.5
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 8.9e-64 247.7 242 56.6
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.5e-63 246.9 242 58.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 4.4e-63 245.4 242 56.2
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 9.8e-63 244.2 212 59.4
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 4.9e-62 241.9 214 61.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.1e-61 240.7 211 60.7
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.9e-61 240.0 242 57.0
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.2e-61 239.2 239 56.5
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 3.2e-61 239.2 209 62.2
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 5.4e-61 238.4 270 52.2
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 7.0e-61 238.0 233 57.9
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 9.2e-61 237.7 234 56.8
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.5e-58 230.3 272 52.9
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 6.8e-56 221.5 219 56.6
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 8.9e-56 221.1 189 63.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-54 217.2 238 55.5
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 6.4e-54 214.9 220 54.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.9e-53 213.4 180 66.1
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.6e-52 210.3 225 54.7
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 6.6e-51 204.9 209 55.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.1e-50 204.1 239 50.6
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.1e-50 204.1 239 50.2
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.5e-50 203.8 207 56.0
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.3e-50 201.4 233 53.2
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 9.5e-50 201.1 122 77.9
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.6e-49 199.1 180 62.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 3.1e-48 196.1 211 54.5
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 9.9e-47 191.0 234 49.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.4e-45 187.2 235 51.1
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.5e-44 182.6 171 59.1
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.8e-44 181.4 225 48.9
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.7e-43 180.3 258 45.0
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 5.1e-43 178.7 122 67.2
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.1e-42 177.6 107 84.1
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 8.1e-41 171.4 189 52.4
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 8.1e-41 171.4 219 44.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.8e-40 170.2 96 78.1
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.9e-40 168.3 216 47.2
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 9.9e-39 164.5 239 43.5
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 2.7e-36 156.4 182 54.9
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.3e-35 154.1 190 50.5
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 5.6e-34 148.7 257 39.7
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.2e-33 145.2 203 45.8
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 1.3e-25 120.9 128 53.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.4e-21 107.5 180 41.1
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 7.1e-21 105.1 70 72.9
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 8.7e-19 98.2 57 71.9
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.1e-18 97.8 50 86.0
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 3.3e-18 96.3 67 58.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.8e-17 93.2 49 85.7
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-14 84.0 68 61.8
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.7e-14 84.0 69 55.1
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.9e-13 80.5 48 83.3
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 4.6e-12 75.9 48 79.2
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.8e-11 73.9 55 74.5
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.1e-11 72.4 48 77.1
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.7e-11 72.0 48 77.1
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.5e-10 70.9 48 75.0
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.5e-10 70.9 48 72.9
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.7e-09 66.2 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.1e-08 63.2 43 74.4
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 9.0e-08 61.6 29 93.1
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.7e-06 57.4 71 50.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 6.5e-06 55.5 42 64.3
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.5e-06 55.1 58 53.4


User provided reference genes

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