Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1632.8 802 100.0
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1625.5 802 99.5
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1526.9 802 93.1
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 802 83.2
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1367.8 803 84.9
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 810 78.5
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1295.8 810 78.5
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1295.0 809 77.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1290.0 803 80.7
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 805 77.4
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 806 76.4
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 807 77.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 802 79.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1279.2 807 77.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 806 76.7
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1275.0 807 77.3
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1270.8 806 76.8
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1270.4 810 75.8
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 803 77.2
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 807 76.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 811 76.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 809 76.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 807 76.2
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1263.4 811 75.6
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 809 76.1
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1262.7 808 76.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1262.3 809 75.3
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 795 76.7
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 806 76.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 817 75.2
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 807 75.3
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 806 75.7
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 809 75.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 807 75.7
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 802 76.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 807 76.1
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 808 75.1
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 798 76.3
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 811 75.0
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 807 75.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 807 75.7
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 808 75.7
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 806 74.8
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 808 75.6
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 808 75.5
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 811 74.8
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1249.2 808 75.6
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 783 78.0
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 803 75.1
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 809 75.4
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1247.3 808 75.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1247.3 809 74.7
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 811 75.0
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 810 74.7
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 809 75.4
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1244.2 807 75.2
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1243.0 803 75.1
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 805 74.7
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1239.9 804 74.6
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1238.0 807 74.0
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1234.6 868 71.0
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1233.8 807 74.3
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1232.6 808 74.5
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1231.5 808 74.3
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1229.5 818 73.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1229.2 804 75.0
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1226.5 805 74.2
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1224.5 808 74.6
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 805 73.0
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 886 68.3
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 804 72.1
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 809 72.2
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 804 72.3
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1203.3 804 71.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1203.3 804 71.8
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1201.8 807 73.1
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1201.4 804 72.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 804 71.8
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 804 72.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 803 72.1
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 805 71.7
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 801 72.3
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 807 72.5
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1196.0 805 71.8
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 805 71.7
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1194.5 803 72.1
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1192.6 805 71.6
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1191.8 828 72.1
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 802 71.6
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1187.2 807 71.3
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 804 71.1
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1184.5 806 71.7
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1183.7 804 71.0
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 810 72.8
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1162.5 911 65.5
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1160.6 804 69.5
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1159.4 859 66.6
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1158.3 804 70.5
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 860 66.5
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1153.7 807 68.4
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 808 70.7
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1143.6 807 68.3
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1138.3 778 71.6
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1120.9 805 67.1
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1120.5 962 61.4
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1111.3 820 68.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1110.1 807 69.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1106.7 763 70.5
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1094.7 971 59.4
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 5.5e-312 1073.9 814 65.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.9e-308 1061.2 819 64.1
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 2.1e-290 1002.3 810 64.2
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 6.4e-287 990.7 605 79.7
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 4.6e-285 984.6 797 60.9
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.9e-283 979.2 801 62.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.9e-232 808.1 781 56.3
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.3e-194 684.1 803 50.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.3e-194 684.1 856 44.9
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.4e-180 637.5 381 80.3
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 1.8e-172 610.5 830 42.5
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.2e-147 528.1 938 35.2
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.3e-146 524.6 845 37.9
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.2e-120 438.3 404 55.4
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.4e-111 408.3 316 63.9
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 2.3e-103 380.9 361 57.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.4e-102 377.1 244 71.7
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.5e-94 351.7 198 86.9
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.2e-78 298.9 221 67.9
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 1.6e-67 261.9 171 74.3
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 4.3e-49 200.7 320 40.3
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.5e-43 181.0 141 66.7
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 6.9e-39 166.8 90 81.1
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.0e-37 162.9 110 72.7
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.4e-36 159.1 101 71.3
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.5e-36 158.3 189 48.7
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.3e-34 151.8 267 39.3
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 9.7e-33 146.4 125 56.0
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 1.1e-28 132.9 179 46.4
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.7e-27 127.5 94 66.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.9e-26 124.4 190 40.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 6.7e-26 123.6 118 54.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.0e-25 122.1 116 52.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.2e-24 118.6 121 57.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.4e-23 115.2 260 30.4
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.4e-23 115.2 80 73.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 6.5e-21 107.1 115 51.3
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.1e-20 106.3 72 70.8
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 1.9e-20 105.5 176 39.8
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 6.3e-16 90.5 59 74.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.0e-14 85.5 50 76.0
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.7e-14 85.1 42 83.3
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 1.0e-13 83.2 72 55.6
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 6.5e-13 80.5 68 60.3
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.6e-11 75.9 145 38.6
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 3.6e-11 74.7 447 22.4
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 4.7e-11 74.3 67 58.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 4.0e-10 71.2 60 51.7
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 6.8e-10 70.5 48 75.0
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.6e-09 68.6 129 34.9
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 6.3e-08 63.9 411 20.7
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.4e-07 62.8 425 21.2
Glyma.14G109000 Glycine max HOM05D000344 ORTHO05D003478 7.0e-07 60.5 358 23.2
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 1.6e-06 59.3 404 21.3
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.0e-06 58.9 57 56.1
TAR626G1591 Trochodendron aralioides HOM05D000344 ORTHO05D003478 2.7e-06 58.5 429 21.0
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.5e-06 58.2 57 56.1
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.5e-06 58.2 57 56.1
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 5.9e-06 57.4 285 23.5
PGSC0003DMG400013186 Solanum tuberosum HOM05D003775 ORTHO05D004314 5.9e-06 57.4 280 25.7


User provided reference genes

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