Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1695.6 844 100.0
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1685.6 844 99.4
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1611.7 845 94.7
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1601.3 844 94.4
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1597.8 908 88.2
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1503.4 844 87.8
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1496.5 837 87.1
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1468.4 837 85.9
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1463.7 844 85.4
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1452.6 844 84.1
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 867 82.1
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1444.9 844 84.4
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1444.5 844 83.8
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1441.4 848 84.4
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1441.0 921 79.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1427.2 847 83.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1426.0 845 83.4
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1424.8 840 81.8
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1423.3 847 83.5
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1421.4 844 82.0
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1418.7 840 83.1
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1414.8 848 81.7
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1411.7 864 81.1
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1411.7 850 82.2
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1410.6 859 82.7
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1407.5 848 81.2
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1406.7 839 82.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1406.0 847 81.3
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1405.2 841 81.0
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1399.4 851 81.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1398.6 842 81.6
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1397.9 874 80.7
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1397.1 847 81.1
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1397.1 853 81.1
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1396.3 853 81.1
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1395.2 841 80.7
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1394.0 842 81.4
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1393.6 847 80.9
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1393.3 844 80.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1392.9 851 80.8
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1392.9 842 81.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1392.1 853 81.0
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1392.1 847 80.8
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1391.7 842 81.4
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1390.9 842 81.2
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1383.6 853 80.7
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1383.2 845 81.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1381.7 847 80.0
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1380.2 847 81.2
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1377.8 845 81.4
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 840 80.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 847 79.8
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 849 79.2
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1367.1 840 79.6
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1366.3 844 79.1
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1366.3 856 78.0
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1364.0 844 80.2
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1363.6 866 78.5
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 837 79.5
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1355.5 856 77.6
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 856 77.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 852 78.9
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1345.5 897 74.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 856 77.3
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1344.3 849 78.3
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1343.9 910 75.2
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1343.6 942 71.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1340.1 787 82.1
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1339.7 842 77.1
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 852 78.3
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 915 72.3
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1316.6 856 75.6
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1315.1 915 71.7
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1291.6 867 74.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1291.6 867 74.9
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1291.2 867 74.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1291.2 867 74.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1291.2 867 74.9
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1289.2 857 74.7
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1288.5 867 74.6
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1284.6 867 74.3
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1282.7 857 74.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1282.3 764 83.6
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1281.9 839 74.6
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1280.4 857 74.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1275.0 856 74.3
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1268.1 836 72.5
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1247.3 857 70.4
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1206.8 839 72.9
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1203.3 728 81.0
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1174.8 840 71.0
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1096.3 844 62.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1095.5 836 63.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1090.1 852 67.8
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1078.5 880 63.9
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 1.4e-308 1062.8 1142 53.9
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 2.7e-299 1031.9 837 59.6
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.1e-292 1006.9 853 64.5
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.5e-286 989.6 624 77.7
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 9.5e-281 970.3 696 72.3
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.8e-279 966.1 728 70.3
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.5e-273 946.4 807 62.5
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.9e-262 907.1 472 94.5
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.1e-240 836.3 604 69.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 4.0e-239 832.0 405 99.3
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 7.9e-227 791.2 685 62.6
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 2.4e-207 726.5 469 79.3
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-194 684.1 603 60.4
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.2e-194 682.2 433 78.8
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.5e-189 665.2 369 91.3
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.5e-182 642.5 358 84.6
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.0e-178 629.4 845 41.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 5.4e-167 592.4 339 85.8
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 6.4e-160 568.9 857 38.6
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.3e-136 491.5 827 35.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 2.9e-128 463.8 433 57.0
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 3.2e-119 433.7 1007 30.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-116 424.1 595 45.5
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.1e-115 421.0 329 59.3
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.2e-110 405.2 367 60.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-104 385.2 262 69.5
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.5e-97 360.1 332 53.6
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 9.4e-87 325.9 240 70.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.1e-78 298.1 218 68.8
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.8e-77 295.0 165 85.5
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.3e-75 286.6 320 47.2
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 5.0e-72 276.9 159 79.9
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.9e-48 197.6 116 83.6
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-43 182.2 97 87.6
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 6.2e-38 163.7 108 70.4
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 8.1e-38 163.3 101 74.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-34 151.0 102 73.5
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-33 149.4 98 74.5
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.6e-33 147.5 185 53.5
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 3.9e-32 144.4 168 51.8
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-31 142.5 98 70.4
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 7.3e-31 140.2 109 65.1
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 7.3e-31 140.2 85 77.6
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 6.2e-30 137.1 101 68.3
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.4e-29 136.0 87 73.6
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 7.6e-28 130.2 67 85.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-26 126.3 113 57.5
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.1e-26 126.3 96 67.7
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.6e-25 122.5 102 61.8
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.1e-25 122.1 103 63.1
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-25 122.1 125 59.2
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.0e-24 119.8 75 69.3
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-23 114.8 96 61.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 2.4e-21 108.6 68 75.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.6e-20 105.1 197 36.0
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-19 101.3 61 75.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.9e-18 99.0 115 48.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 3.2e-18 98.2 84 60.7
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-17 95.5 52 80.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 6.0e-17 94.0 52 78.8
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.6e-14 85.9 87 55.2
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.6e-14 85.9 87 55.2
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.4e-13 82.8 54 79.6
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.0e-13 81.3 49 83.7
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 4.9e-11 74.3 79 51.9
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.9e-10 72.4 37 91.9
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 3.5e-09 68.2 85 51.8
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 1.3e-08 66.2 76 51.3
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 8.1e-06 57.0 41 68.3


User provided reference genes

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