Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.7e-276 955.3 457 100.0
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.6e-272 941.4 457 98.5
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 1.2e-245 852.8 454 90.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.8e-209 732.6 461 77.9
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 8.1e-186 654.1 455 72.3
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 3.1e-185 652.1 458 70.5
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 7.7e-152 541.2 375 72.0
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 4.0e-132 475.7 448 53.8
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.4e-129 467.2 492 51.0
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.2e-125 454.1 450 52.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.3e-124 449.9 460 50.2
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.9e-116 421.4 509 46.8
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 5.8e-115 418.7 483 47.2
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.3e-111 406.8 489 46.4
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-110 403.7 457 48.6
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 7.3e-110 401.7 369 54.7
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.3e-110 401.7 457 48.8
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-109 401.0 445 48.1
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.3e-108 396.7 483 46.0
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 5.6e-102 375.6 482 44.2
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 9.5e-102 374.8 357 54.1
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.8e-100 370.5 461 46.0
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 5.2e-100 369.0 456 45.2
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 3.4e-99 366.3 466 44.6
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.9e-98 363.2 473 43.1
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.4e-97 360.9 457 43.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 4.1e-97 359.4 466 43.6
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 4.1e-97 359.4 449 45.7
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.6e-96 357.5 474 43.5
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.5e-96 356.3 489 42.3
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-96 355.9 457 42.9
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 6.0e-96 355.5 467 44.8
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.7e-95 354.0 450 45.8
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.5e-94 350.9 445 45.4
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.5e-94 350.9 457 44.2
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.5e-94 350.1 437 44.2
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 3.6e-93 346.3 461 43.6
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 6.2e-93 345.5 457 42.2
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 8.1e-93 345.1 385 47.3
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 1.4e-92 344.4 446 45.3
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.4e-92 343.6 369 48.2
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.4e-92 343.6 460 44.6
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 3.1e-92 343.2 476 43.3
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.2e-91 341.3 455 42.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.6e-91 340.1 479 42.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 4.4e-91 339.3 454 42.1
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 7.6e-91 338.6 481 42.0
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 9.9e-91 338.2 455 44.6
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 9.3e-89 331.6 449 42.1
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.6e-88 330.9 378 48.9
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.6e-88 330.9 515 39.2
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.7e-88 330.1 461 42.5
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 3.5e-88 329.7 443 44.7
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 3.5e-88 329.7 310 51.6
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-88 329.3 472 42.2
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 7.8e-88 328.6 459 41.6
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 1.0e-87 328.2 493 39.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.9e-87 326.2 455 42.2
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 8.7e-87 325.1 458 42.6
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 1.5e-86 324.3 446 41.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 3.3e-86 323.2 444 42.3
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.3e-86 322.8 491 38.1
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 9.6e-86 321.6 452 42.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 6.2e-85 318.9 456 42.1
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 4.0e-84 316.2 446 42.6
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.0e-84 315.1 374 46.0
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.0e-83 313.9 398 44.7
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.9e-82 310.1 380 45.3
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.9e-82 310.1 445 41.8
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 6.4e-82 308.9 414 44.4
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 4.2e-81 306.2 327 48.0
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 2.7e-80 303.5 376 44.7
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 7.9e-80 302.0 376 44.7
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 1.8e-79 300.8 316 50.9
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 3.0e-79 300.1 385 46.5
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 1.6e-77 294.3 376 44.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 4.8e-77 292.7 395 43.5
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 8.1e-77 292.0 454 39.4
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 1.8e-76 290.8 370 43.8
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 5.3e-76 289.3 451 41.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.3e-74 284.6 456 38.6
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.7e-74 284.3 370 45.1
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 2.4e-73 280.4 459 36.8
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 3.2e-73 280.0 443 39.5
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-72 277.7 472 39.4
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.1e-72 277.3 473 38.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 4.6e-72 276.2 448 38.4
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.0e-71 275.0 450 39.3
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.3e-71 274.6 509 36.0
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.9e-70 270.8 451 37.5
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.5e-70 270.4 444 38.3
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 3.3e-70 270.0 451 37.5
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 4.3e-70 269.6 444 38.5
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 9.6e-70 268.5 444 38.7
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 2.8e-69 266.9 448 38.8
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.7e-69 266.5 456 36.4
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 6.2e-69 265.8 451 37.3
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 4.9e-66 256.1 353 39.9
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 4.2e-65 253.1 351 41.6
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 5.5e-65 252.7 366 40.2
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.6e-64 251.1 432 36.8
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.3e-62 243.0 434 36.9
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.7e-62 241.9 492 34.6
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 3.7e-61 240.0 256 52.0
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.7e-61 240.0 292 44.5
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 5.3e-60 236.1 348 40.5
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 6.9e-60 235.7 296 41.9
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.2e-59 235.0 498 33.5
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.9e-54 217.6 444 33.3
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.1e-52 209.9 189 55.0
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 5.3e-52 209.5 212 51.4
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.3e-52 209.5 354 39.8
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 5.3e-52 209.5 336 39.0
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 2.6e-51 207.2 322 40.7
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.4e-49 201.4 311 38.3
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 3.0e-47 193.7 146 64.4
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-46 191.4 234 44.4
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.4e-46 189.9 435 33.1
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 4.4e-46 189.9 154 57.8
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.0e-42 178.7 353 34.6
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 1.7e-42 177.9 385 34.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.9e-42 177.2 347 34.9
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 3.8e-42 176.8 348 35.6
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 7.2e-41 172.6 489 29.0
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 8.8e-39 165.6 233 42.5
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 4.4e-38 163.3 332 33.1
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.4e-38 162.5 290 37.9
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.4e-38 162.5 290 37.9
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 6.3e-37 159.5 239 40.6
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 2.4e-36 157.5 158 53.8
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.1e-36 156.8 547 27.1
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.7e-35 152.5 553 26.8
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.2e-33 146.7 475 27.8
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 5.2e-31 139.8 248 37.1
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 6.7e-31 139.4 153 49.0
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 7.5e-30 136.0 182 42.3
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 3.7e-29 133.7 211 35.5
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 4.8e-29 133.3 103 61.2
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.0e-27 127.9 167 40.7
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.0e-27 127.9 293 31.4
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 8.5e-26 122.5 100 57.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.4e-25 119.0 385 29.1
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.4e-22 110.2 265 32.5
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.4e-20 104.4 142 41.5
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 7.0e-20 102.8 114 47.4
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.0e-19 101.3 97 52.6
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 9.5e-17 92.4 188 34.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 8.0e-16 89.4 482 23.2
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.8e-15 88.2 371 26.1
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.3e-15 87.8 334 25.7
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 2.0e-14 84.7 334 26.3
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 2.6e-14 84.3 220 28.2
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 7.5e-14 82.8 135 34.8
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.7e-11 74.3 213 29.6
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 5.0e-10 70.1 61 52.5
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.1e-09 68.9 98 40.8
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-09 67.8 238 28.2
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 6.1e-08 63.2 114 34.2
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 1.4e-07 62.0 210 25.7
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 9.8e-06 55.8 89 33.7


User provided reference genes

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