Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 1.7e-131 472.6 236 100.0
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 7.3e-130 467.2 239 98.7
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 2.0e-127 459.1 236 97.0
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.4e-117 426.4 241 88.4
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.4e-117 424.5 241 87.6
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.6e-116 421.4 238 87.8
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 3.6e-105 385.2 234 79.1
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.4e-104 383.3 235 79.6
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.9e-104 380.9 239 77.4
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 9.0e-104 380.6 230 79.6
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 9.0e-104 380.6 230 81.3
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-103 379.8 234 78.6
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 4.5e-103 378.3 230 79.1
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 7.6e-103 377.5 236 77.1
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.7e-102 376.3 233 77.7
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.1e-101 373.6 234 76.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.1e-101 373.6 234 76.9
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.4e-101 373.2 233 77.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 7.1e-101 370.9 233 78.1
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.2e-100 370.2 235 75.3
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.2e-100 370.2 232 76.7
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.7e-100 369.0 237 76.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 7.9e-100 367.5 235 76.2
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.0e-99 367.1 234 75.6
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.3e-99 366.7 233 73.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 3.9e-99 365.2 234 75.6
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.9e-99 365.2 234 76.1
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 3.9e-99 365.2 234 76.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 5.1e-99 364.8 230 77.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 5.1e-99 364.8 234 76.5
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 8.7e-99 364.0 229 75.5
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 8.7e-99 364.0 229 77.7
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 8.7e-99 364.0 238 75.2
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.1e-98 363.6 199 90.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.1e-98 363.6 230 77.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 1.5e-98 363.2 234 75.6
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.5e-98 363.2 235 75.3
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.5e-98 363.2 235 75.3
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 4.3e-98 361.7 234 74.8
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 4.3e-98 361.7 234 74.8
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 4.3e-98 361.7 229 76.4
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-98 360.9 229 74.2
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 7.4e-98 360.9 241 74.3
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 9.6e-98 360.5 234 75.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.3e-97 360.1 229 74.7
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 1.6e-97 359.8 230 75.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 2.8e-97 359.0 229 75.5
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.8e-97 358.2 229 74.7
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 4.8e-97 358.2 234 73.9
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.1e-97 357.5 229 73.8
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.1e-96 357.1 227 74.4
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.1e-96 357.1 227 74.9
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.4e-96 356.7 229 74.7
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.4e-96 356.7 229 74.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.8e-96 356.3 229 74.2
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.4e-96 355.9 228 74.1
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.4e-96 355.9 227 75.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.4e-96 355.9 227 75.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.1e-96 355.5 222 77.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 6.9e-96 354.4 233 74.7
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 6.9e-96 354.4 249 69.9
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 9.0e-96 354.0 233 72.1
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 9.0e-96 354.0 229 71.6
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 9.0e-96 354.0 234 72.2
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.0e-95 352.8 233 73.8
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 2.0e-95 352.8 229 73.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.6e-95 352.4 268 67.5
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.0e-94 350.5 229 72.1
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.2e-94 349.4 234 74.4
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.8e-94 348.6 233 71.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.8e-94 348.6 229 73.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.1e-93 347.1 211 79.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.1e-93 347.1 229 73.4
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.4e-93 346.7 236 69.5
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.5e-93 345.9 224 73.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.5e-93 345.9 233 72.1
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.5e-93 345.9 233 72.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.5e-93 345.9 233 72.1
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.2e-93 345.5 237 70.5
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 3.2e-93 345.5 233 73.0
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.5e-93 344.7 229 72.5
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.1e-93 344.4 229 73.4
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 2.7e-92 342.4 229 72.5
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 7.9e-92 340.9 233 68.7
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 7.9e-92 340.9 233 71.2
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.0e-91 340.5 233 68.7
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.8e-91 339.7 230 70.4
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.8e-91 339.7 213 77.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 3.0e-91 339.0 228 72.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.5e-90 336.7 237 69.2
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.9e-90 336.3 233 70.8
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 7.4e-90 334.3 212 74.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.4e-90 334.3 284 59.9
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.6e-89 333.2 199 80.4
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 2.8e-89 332.4 254 65.7
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.8e-89 332.4 270 62.6
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 4.8e-89 331.6 332 53.9
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 6.2e-89 331.3 191 82.2
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.1e-88 330.5 229 71.2
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.1e-85 320.5 191 80.1
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.2e-85 318.5 233 64.8
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 4.2e-85 318.5 235 67.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 8.2e-81 304.3 200 74.0
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.1e-80 303.9 206 70.4
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 5.3e-80 301.6 234 66.7
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.1e-77 293.9 191 72.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 7.4e-74 281.2 233 61.4
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.8e-72 276.6 169 76.9
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.2e-71 273.9 229 55.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 2.6e-71 272.7 227 58.6
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 2.7e-68 262.7 164 74.4
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 3.0e-67 259.2 221 55.2
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.8e-65 252.7 154 76.6
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-61 240.7 150 77.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.6e-55 220.3 134 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 2.6e-55 219.5 191 56.5
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.5e-54 214.9 142 74.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.5e-54 214.9 142 74.6
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 4.7e-52 208.8 229 46.3
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 2.0e-50 203.4 128 72.7
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.7e-50 201.8 127 79.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 4.8e-49 198.7 131 73.3
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.4e-48 196.4 182 56.0
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.1e-45 187.6 114 75.4
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-45 186.8 119 77.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.5e-45 185.3 119 76.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 9.4e-45 184.5 121 72.7
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.1e-44 183.3 164 58.5
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 5.7e-42 175.3 120 71.7
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.1e-40 171.0 157 61.1
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.2e-39 167.5 230 43.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.0e-34 150.2 129 62.8
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 8.3e-33 144.8 121 62.0
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.7e-31 139.8 101 71.3
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.5e-31 139.4 111 65.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 5.9e-31 138.7 85 76.5
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 2.3e-30 136.7 175 42.3
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 8.0e-28 128.3 94 70.2
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-26 124.0 81 74.1
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.8e-26 121.3 147 40.1
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-25 120.9 89 66.3
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 8.3e-25 118.2 235 34.9
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.3e-22 110.2 100 64.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.3e-21 106.3 106 51.9
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.8e-19 100.5 72 66.7
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 3.7e-17 92.8 153 32.0
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.4e-17 92.0 54 79.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 4.1e-16 89.4 51 78.4
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-14 83.6 63 65.1
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.7e-12 75.9 162 35.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.7e-07 60.1 34 79.4


User provided reference genes

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