Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen04g025080 Solanum pennellii HOM05D001730 ORTHO05D027964 9.2e-119 430.3 220 100.0
Sopen04g025070 Solanum pennellii HOM05D000151 ORTHO05D000074 1.4e-37 160.6 85 94.1
Solyc04g055230.2 Solanum lycopersicum HOM05D001730 ORTHO05D027964 1.8e-26 123.6 64 95.3
PGSC0003DMG400001884 Solanum tuberosum HOM05D001730 ORTHO05D027964 1.5e-20 104.0 90 67.8
Peaxi162Scf01378g00122 Petunia axillaris HOM05D001730 ORTHO05D005730 3.1e-13 79.7 151 42.4
Gohir.D11G323500 Gossypium hirsutum HOM05D001730 ORTHO05D005730 4.0e-13 79.3 179 38.5
Gohir.A11G308100 Gossypium hirsutum HOM05D001730 ORTHO05D005730 6.8e-13 78.6 179 38.5
Gorai.007G353500 Gossypium raimondii HOM05D001730 ORTHO05D005730 6.8e-13 78.6 179 38.5
Nitab4.5_0001364g0030 Nicotiana tabacum HOM05D001730 ORTHO05D005730 2.0e-12 77.0 179 37.4
Os06g0175800 Oryza sativa ssp. japonica HOM05D001730 ORTHO05D005730 2.0e-12 77.0 202 35.1
SalBow2G1785 Salvia bowleyana HOM05D001730 ORTHO05D005730 2.0e-12 77.0 179 38.0
Solyc10g079720.2 Solanum lycopersicum HOM05D001730 ORTHO05D005730 4.4e-12 75.9 179 37.4
Sopen10g030350 Solanum pennellii HOM05D001730 ORTHO05D005730 4.4e-12 75.9 179 37.4
PGSC0003DMG400029836 Solanum tuberosum HOM05D001730 ORTHO05D005730 4.4e-12 75.9 179 37.4
Psat6g070960 Pisum sativum HOM05D001730 ORTHO05D005730 5.8e-12 75.5 179 37.4
Nn2g14860 Nelumbo nucifera HOM05D001730 ORTHO05D005730 7.5e-12 75.1 179 36.9
Os06g0176900 Oryza sativa ssp. japonica HOM05D001730 ORTHO05D005730 7.5e-12 75.1 203 34.5
Duzib093G2101 Durio zibethinus HOM05D001730 ORTHO05D005730 9.8e-12 74.7 179 36.9
Peaxi162Scf00970g00166 Petunia axillaris HOM05D001730 ORTHO05D005730 9.8e-12 74.7 203 33.5
Migut.K00129 Erythranthe guttata HOM05D001730 ORTHO05D005730 1.3e-11 74.3 179 36.3
PGR044G2076 Punica granatum HOM05D001730 ORTHO05D005730 1.3e-11 74.3 179 36.9
CAN.G641.73 Capsicum annuum HOM05D001730 ORTHO05D005730 1.7e-11 73.9 179 36.9
Migut.J01673 Erythranthe guttata HOM05D001730 ORTHO05D005730 1.7e-11 73.9 179 35.8
Glyma.03G129700 Glycine max HOM05D001730 ORTHO05D005730 1.7e-11 73.9 202 33.7
SGA_v2.0_scaffold94G28527 Striga asiatica HOM05D001730 ORTHO05D005730 1.7e-11 73.9 179 36.9
PSO017G5717 Papaver somniferum HOM05D001730 ORTHO05D005730 2.2e-11 73.6 179 35.2
PGR031G1759 Punica granatum HOM05D001730 ORTHO05D005730 2.2e-11 73.6 179 36.3
Zm00001eb375190 Zea mays HOM05D001730 ORTHO05D005730 2.2e-11 73.6 179 36.9
Cc06_g18900 Coffea canephora HOM05D001730 ORTHO05D005730 2.9e-11 73.2 179 35.2
PSO170G6374 Papaver somniferum HOM05D001730 ORTHO05D005730 2.9e-11 73.2 179 35.2
Eucgr.A02261 Eucalyptus grandis HOM05D001730 ORTHO05D005730 4.9e-11 72.4 179 35.8
PSO063G4026 Papaver somniferum HOM05D001730 ORTHO05D005730 6.4e-11 72.0 170 37.6
Pp3c5_1990 Physcomitrium patens HOM05D001730 ORTHO05D005730 6.4e-11 72.0 202 32.2
SalBow2G0687 Salvia bowleyana HOM05D001730 ORTHO05D021573 6.4e-11 72.0 50 78.0
PSO832G4537 Papaver somniferum HOM05D001730 ORTHO05D005730 8.3e-11 71.6 170 37.6
CSS0010163 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D005730 1.1e-10 71.2 50 76.0
Potri.016G038200 Populus trichocarpa HOM05D001730 ORTHO05D005730 1.1e-10 71.2 50 76.0
RcHm_v2.0_Chr2g0125281 Rosa chinensis HOM05D001730 ORTHO05D005730 1.1e-10 71.2 50 78.0
Sabra16G0040100 Salix brachista HOM05D001730 ORTHO05D005730 1.1e-10 71.2 50 76.0
Sabra16G0044800 Salix brachista HOM05D001730 ORTHO05D005730 1.1e-10 71.2 50 76.0
ATR1134G130 Amborella trichopoda HOM05D001730 ORTHO05D005730 1.4e-10 70.9 179 35.2
CiPaw.09G046100 Carya illinoinensis HOM05D001730 ORTHO05D005730 1.4e-10 70.9 50 74.0
Glyma.19G132000 Glycine max HOM05D001730 ORTHO05D005730 1.4e-10 70.9 50 74.0
Sed0022611 Sechium edule HOM05D001730 ORTHO05D005730 1.4e-10 70.9 50 74.0
MBI16_g23860_MAGBIO Magnolia biondii HOM05D001730 ORTHO05D005730 1.9e-10 70.5 179 35.8
RhsimUnG0239200 Rhododendron simsii HOM05D001730 ORTHO05D005730 1.9e-10 70.5 71 56.3
Sc13g0001250 Simmondsia chinensis HOM05D001730 ORTHO05D005730 1.9e-10 70.5 179 35.2
Thecc.05G138900 Theobroma cacao HOM05D001730 ORTHO05D005730 1.9e-10 70.5 50 76.0
TWI77G0683 Tripterygium wilfordii HOM05D001730 ORTHO05D005730 1.9e-10 70.5 50 74.0
HPP92_013743 Vanilla planifolia HOM05D001730 ORTHO05D005730 1.9e-10 70.5 202 32.2
MELO3C026534.2 Cucumis melo HOM05D001730 ORTHO05D005730 2.4e-10 70.1 50 74.0
CsaV3_6G031510 Cucumis sativus L. HOM05D001730 ORTHO05D005730 2.4e-10 70.1 50 74.0
Nitab4.5_0000571g0120 Nicotiana tabacum HOM05D001730 ORTHO05D005730 2.4e-10 70.1 50 76.0
Peaxi162Scf00420g00564 Petunia axillaris HOM05D001730 ORTHO05D005730 2.4e-10 70.1 50 76.0
Hund24627 Selenicereus undatus HOM05D001730 ORTHO05D005730 2.4e-10 70.1 50 74.0
Aa31LG10G11970 Aethionema arabicum HOM05D001730 ORTHO05D005730 3.2e-10 69.7 179 34.6
Ciclev10020055m.g Citrus clementina HOM05D001730 ORTHO05D005730 3.2e-10 69.7 50 74.0
Lalb_Chr20g0110151 Lupinus albus HOM05D001730 ORTHO05D005730 3.2e-10 69.7 50 74.0
MD12G1093700 Malus domestica HOM05D001730 ORTHO05D005730 3.2e-10 69.7 50 74.0
Oeu063773.2 Olea europaea HOM05D001730 ORTHO05D005730 3.2e-10 69.7 50 74.0
A04p03780 Brassica napus HOM05D001730 ORTHO05D005730 4.1e-10 69.3 179 33.0
BraA04t16056Z Brassica rapa HOM05D001730 ORTHO05D005730 4.1e-10 69.3 179 33.0
Cpa.g.sc5.210 Carica papaya HOM05D001730 ORTHO05D005730 4.1e-10 69.3 50 74.0
Nitab4.5_0002162g0100 Nicotiana tabacum HOM05D001730 ORTHO05D005730 4.1e-10 69.3 50 74.0
Nitab4.5_0002208g0110 Nicotiana tabacum HOM05D001730 ORTHO05D005730 4.1e-10 69.3 50 74.0
BcaC02g09899 Brassica carinata HOM05D001730 ORTHO05D005730 5.4e-10 68.9 179 33.0
C04p35400 Brassica napus HOM05D001730 ORTHO05D005730 5.4e-10 68.9 179 33.0
DCAR_013636 Daucus carota HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 74.0
FvH4_3g30150 Fragaria vesca HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 74.0
FAN11G0160 Fragaria x ananassa HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 74.0
FAN16G3033 Fragaria x ananassa HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 74.0
FAN21G0837 Fragaria x ananassa HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 74.0
Lj2g0003873 Lotus japonicus HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 72.0
Medtr1g064320 Medicago truncatula HOM05D001730 ORTHO05D005730 5.4e-10 68.9 179 36.3
QL07p008834 Quercus lobata HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 72.0
VMungo1383G2598 Vigna mungo HOM05D001730 ORTHO05D005730 5.4e-10 68.9 50 72.0
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 7.0e-10 68.6 50 70.0
AUR62040828 Chenopodium quinoa HOM05D001730 ORTHO05D005730 7.0e-10 68.6 50 72.0
Lalb_Chr25g0286861 Lupinus albus HOM05D001730 ORTHO05D005730 7.0e-10 68.6 50 72.0
Atru.chr1.1491 Acer truncatum HOM05D001730 ORTHO05D005730 9.2e-10 68.2 50 72.0
EL10Ac3g07205 Beta vulgaris HOM05D001730 ORTHO05D005730 9.2e-10 68.2 50 70.0
AUR62030340 Chenopodium quinoa HOM05D001730 ORTHO05D005730 9.2e-10 68.2 50 72.0
QL07p008853 Quercus lobata HOM05D001730 ORTHO05D005730 9.2e-10 68.2 50 70.0
THA.LOC104824410 Tarenaya hassleriana HOM05D001730 ORTHO05D005730 9.2e-10 68.2 50 72.0
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 1.2e-09 67.8 50 72.0
ClCG08G009380 Citrullus lanatus HOM05D001730 ORTHO05D005730 1.2e-09 67.8 50 72.0
SEGI_02944 Sequoiadendron giganteum HOM05D001730 ORTHO05D005730 1.2e-09 67.8 202 32.2
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 1.6e-09 67.4 50 72.0
Cfa020023 Carpinus fangiana HOM05D001730 ORTHO05D005730 1.6e-09 67.4 50 70.0
Dinv05063 Davidia involucrata HOM05D001730 ORTHO05D005730 1.6e-09 67.4 192 33.9
ECA236G4630 Erigeron canadensis HOM05D001730 ORTHO05D005730 1.6e-09 67.4 50 70.0
HanXRQChr06g0176921 Helianthus annuus HOM05D001730 ORTHO05D005730 1.6e-09 67.4 50 70.0
Lsat_1_v5_gn_8_82641 Lactuca sativa HOM05D001730 ORTHO05D005730 1.6e-09 67.4 50 70.0
TAR623G1659 Trochodendron aralioides HOM05D001730 ORTHO05D005730 1.6e-09 67.4 50 68.0
BcaB02g07623 Brassica carinata HOM05D001730 ORTHO05D005730 2.0e-09 67.0 50 70.0
C08p32380 Brassica napus HOM05D001730 ORTHO05D005730 2.0e-09 67.0 50 70.0
COL.COLO4_05065 Corchorus olitorius HOM05D001730 ORTHO05D005730 2.0e-09 67.0 50 72.0
Dinv34377 Davidia involucrata HOM05D001730 ORTHO05D005730 2.0e-09 67.0 50 70.0
Manes.01G122300 Manihot esculenta HOM05D001730 ORTHO05D005730 2.0e-09 67.0 50 70.0
Phvul.001G125400 Phaseolus vulgaris HOM05D001730 ORTHO05D005730 2.0e-09 67.0 50 70.0
BcaB02g08332 Brassica carinata HOM05D001730 ORTHO05D005730 2.7e-09 66.6 179 32.4
Lj1A1103T61 Lonicera japonica HOM05D001730 ORTHO05D005730 2.7e-09 66.6 50 70.0
Mapoly0005s0149 Marchantia polymorpha HOM05D001730 ORTHO05D005730 2.7e-09 66.6 181 34.3
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 3.5e-09 66.2 50 72.0
DCAR_020551 Daucus carota HOM05D001730 ORTHO05D005730 3.5e-09 66.2 50 68.0
Nn7g36657 Nelumbo nucifera HOM05D001730 ORTHO05D005730 3.5e-09 66.2 50 72.0
PSO063G6072 Papaver somniferum HOM05D001730 ORTHO05D005730 3.5e-09 66.2 50 70.0
BcaC07g40051 Brassica carinata HOM05D001730 ORTHO05D005730 4.6e-09 65.9 50 68.0
Carub.0005s2385 Capsella rubella HOM05D001730 ORTHO05D005730 4.6e-09 65.9 50 68.0
CANSAT64G2870 Cannabis sativa HOM05D001730 ORTHO05D005730 6.0e-09 65.5 50 68.0
Manes.09G007000 Manihot esculenta HOM05D001730 ORTHO05D005730 6.0e-09 65.5 50 70.0
RhsimUnG0220800 Rhododendron simsii HOM05D001730 ORTHO05D005730 6.0e-09 65.5 50 66.0
Aqoxy2G00352 Aquilegia oxysepala HOM05D001730 ORTHO05D005730 7.8e-09 65.1 50 66.0
AL5G38530 Arabidopsis lyrata HOM05D001730 ORTHO05D005730 7.8e-09 65.1 50 68.0
AT3G57050 Arabidopsis thaliana HOM05D001730 ORTHO05D005730 7.8e-09 65.1 50 68.0
Thhalv10005955m.g Eutrema salsugineum HOM05D001730 ORTHO05D005730 7.8e-09 65.1 50 68.0
Sp5g05530 Schrenkiella parvula HOM05D001730 ORTHO05D005730 7.8e-09 65.1 50 68.0
GSVIVG01033607001 Vitis vinifera HOM05D001730 ORTHO05D005730 7.8e-09 65.1 50 68.0
A09p49970 Brassica napus HOM05D001730 ORTHO05D005730 1.0e-08 64.7 50 68.0
BraA09t40447Z Brassica rapa HOM05D001730 ORTHO05D005730 1.0e-08 64.7 50 68.0
CBR_g45651 Chara braunii HOM05D001730 ORTHO05D005730 1.0e-08 64.7 179 34.6
Rhsim03G0042000 Rhododendron simsii HOM05D001730 ORTHO05D005730 1.0e-08 64.7 50 66.0
BolC8t50852H Brassica oleracea HOM05D001730 ORTHO05D005730 1.7e-08 63.9 50 68.0
CARHR167240 Cardamine hirsuta HOM05D001730 ORTHO05D005730 3.0e-08 63.2 50 66.0
HanXRQChr01g0009311 Helianthus annuus HOM05D001730 ORTHO05D005730 3.9e-08 62.8 50 72.0
ECA248G3688 Erigeron canadensis HOM05D001730 ORTHO05D005730 5.0e-08 62.4 162 32.7
SMO358G0226 Selaginella moellendorffii HOM05D001730 ORTHO05D005730 5.0e-08 62.4 50 66.0
BcaC07g40082 Brassica carinata HOM05D001730 ORTHO05D005730 4.3e-07 59.3 59 54.2
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 5.6e-07 58.9 58 51.7
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 7.3e-07 58.5 58 51.7
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 1.2e-06 57.8 58 51.7
C06p24110 Brassica napus HOM05D001730 ORTHO05D027964 1.6e-06 57.4 46 65.2
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 2.1e-06 57.0 58 50.0


User provided reference genes

Program Settings