Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 3.6e-226 788.1 450 100.0
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.9e-204 715.3 450 88.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.7e-200 701.0 448 87.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 6.6e-164 581.3 450 74.0
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 7.6e-160 567.8 452 72.3
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.4e-152 542.0 450 69.6
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.1e-146 523.1 452 70.4
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.2e-135 486.5 452 63.9
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.1e-134 481.5 457 63.9
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.3e-134 481.1 454 65.0
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 2.8e-130 469.5 454 63.4
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.1e-121 441.0 453 57.6
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.8e-119 432.6 475 57.7
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 6.9e-113 411.8 458 56.6
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 1.9e-110 403.7 454 55.7
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.2e-110 402.9 455 57.8
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 4.2e-110 402.5 453 56.1
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 6.7e-108 395.2 451 54.8
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 4.4e-107 392.5 469 52.9
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 5.7e-107 392.1 450 53.8
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 9.7e-107 391.3 452 53.5
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.8e-106 389.8 458 53.1
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 5.3e-105 385.6 468 51.7
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.2e-104 384.4 477 54.9
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.2e-104 384.4 450 54.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.2e-104 384.4 450 54.0
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 5.9e-104 382.1 450 53.6
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.2e-103 380.2 453 57.0
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 5.0e-103 379.0 465 54.4
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 5.5e-102 375.6 450 52.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.6e-101 374.0 484 53.9
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.1e-101 373.6 499 54.1
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.0e-101 371.7 450 52.0
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.3e-100 370.2 450 52.2
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.0e-100 369.8 473 55.2
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.1e-99 367.9 463 52.9
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.1e-99 367.9 453 53.2
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.4e-97 360.9 478 49.6
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.4e-97 360.1 449 51.7
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 7.0e-97 358.6 462 51.7
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 9.1e-97 358.2 456 54.4
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.0e-96 357.1 452 52.7
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 4.5e-96 355.9 452 55.1
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.9e-96 355.5 451 51.2
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.0e-95 354.8 503 50.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.3e-95 354.4 457 50.5
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.3e-95 354.4 450 54.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.9e-95 353.2 490 48.4
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 5.0e-95 352.4 450 54.2
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.0e-95 352.4 453 51.0
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 8.5e-95 351.7 469 49.7
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.5e-94 350.1 540 46.5
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.6e-93 347.4 489 47.9
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 1.6e-93 347.4 451 52.3
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 4.7e-93 345.9 467 50.1
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.4e-92 344.4 454 50.4
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 6.8e-92 342.0 490 46.7
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.8e-92 342.0 475 51.8
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 8.8e-92 341.7 452 50.0
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.2e-91 341.3 449 52.8
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.0e-91 340.5 458 49.1
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 5.7e-91 339.0 448 52.5
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.3e-90 337.8 472 48.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.3e-90 337.8 500 50.6
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.7e-90 337.4 461 48.2
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 4.8e-90 335.9 465 47.7
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.4e-89 334.3 466 53.4
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.8e-89 334.0 481 47.2
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.4e-89 333.6 463 48.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 9.1e-89 331.6 467 52.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.0e-88 330.5 473 50.7
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.5e-88 329.7 505 45.7
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.5e-88 329.3 452 49.8
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.5e-88 329.3 441 49.4
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 4.5e-88 329.3 476 47.9
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 5.9e-88 328.9 468 53.0
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 5.9e-88 328.9 461 52.7
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.0e-87 328.2 463 48.6
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.0e-87 328.2 469 46.7
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.7e-87 327.4 455 51.4
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.9e-87 326.6 482 47.7
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.9e-86 323.9 465 48.8
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 3.2e-86 323.2 467 48.2
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 4.2e-86 322.8 471 45.2
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.2e-86 322.8 416 52.4
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 5.5e-86 322.4 461 52.3
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 5.5e-86 322.4 453 49.4
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.6e-85 320.9 450 48.7
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.0e-84 318.2 461 45.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.4e-84 317.8 460 49.8
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.8e-84 317.4 503 45.1
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.0e-84 316.6 458 46.7
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.2e-84 315.8 478 46.2
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.6e-83 313.5 487 48.5
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-83 313.5 458 47.2
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 3.4e-83 313.2 465 50.3
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 4.4e-83 312.8 462 48.7
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.4e-83 312.8 456 50.7
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.3e-82 311.2 456 47.6
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.2e-82 310.5 458 47.4
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 2.8e-82 310.1 493 45.6
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.4e-81 307.8 453 49.9
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 7.0e-81 305.4 460 45.7
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 9.1e-81 305.1 466 49.6
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 1.2e-80 304.7 454 46.9
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.6e-80 304.3 461 44.9
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.6e-80 304.3 460 45.4
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.7e-80 303.5 457 47.5
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 5.9e-80 302.4 457 49.9
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 1.0e-79 301.6 462 45.2
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.7e-79 300.8 479 43.6
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.9e-79 300.1 469 45.8
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-79 300.1 469 45.8
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.9e-79 300.1 469 45.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.9e-79 300.1 497 44.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.8e-79 299.7 474 47.7
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.1e-78 298.1 471 49.7
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.1e-78 298.1 458 48.5
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 3.3e-78 296.6 396 50.3
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 4.2e-78 296.2 460 47.0
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.1e-77 293.9 456 49.1
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 4.7e-77 292.7 459 50.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.8e-76 290.8 454 50.0
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 3.0e-76 290.0 450 45.8
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.0e-76 289.7 456 48.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.8e-76 288.9 475 45.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 6.8e-76 288.9 457 46.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 4.4e-75 286.2 458 51.1
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.7e-74 284.3 454 44.9
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.2e-74 283.9 238 64.7
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.7e-74 283.1 466 43.8
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.9e-74 282.7 461 44.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 8.3e-74 282.0 472 47.9
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 4.1e-73 279.6 455 44.8
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 6.1e-69 265.8 234 63.2
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 4.0e-68 263.1 495 42.0
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.2e-66 257.3 486 44.2
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.4e-66 255.8 436 43.8
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.4e-65 253.8 451 44.8
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.0e-63 246.9 472 41.5
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.1e-60 236.9 459 41.2
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.1e-60 236.9 459 41.2
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 8.9e-60 235.3 459 41.0
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.2e-58 230.7 473 39.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 5.4e-57 226.1 497 38.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 8.6e-55 218.8 454 43.2
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.7e-53 213.0 479 39.0
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.4e-52 211.5 459 41.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 5.8e-51 206.1 475 39.4
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.4e-49 200.7 365 43.6
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 5.1e-47 193.0 152 65.8
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.0e-39 168.7 370 39.2
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 9.6e-38 162.2 473 34.2
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 9.6e-38 162.2 360 39.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 8.1e-37 159.1 452 33.2
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.4e-36 157.5 481 37.0
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.4e-35 153.7 175 52.6
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.5e-27 126.7 86 72.1
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 4.2e-25 120.2 101 65.3
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 4.3e-22 110.2 138 47.8
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 2.2e-18 97.8 87 64.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 4.9e-18 96.7 131 44.3
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 4.9e-18 96.7 131 44.3
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.1e-17 95.5 95 62.1
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 3.9e-15 87.0 86 60.5
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 3.3e-14 84.0 489 25.2
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 9.6e-14 82.4 114 48.2
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.1e-13 81.3 281 32.7
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.8e-12 78.2 66 59.1
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 5.3e-12 76.6 137 43.8
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 9.0e-12 75.9 449 26.3
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 9.0e-12 75.9 205 31.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.2e-11 75.5 88 46.6
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 2.6e-11 74.3 130 35.4
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.6e-11 74.3 130 35.4
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.3e-07 62.0 65 56.9
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.3e-06 57.0 132 33.3
CAN.G583.9 Capsicum annuum HOM05D002258 ORTHO05D002539 9.7e-06 55.8 124 33.9
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 9.7e-06 55.8 124 33.1


User provided reference genes

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