Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 0.0e+00 1869.0 919 100.0
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 0.0e+00 1756.5 920 94.2
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 0.0e+00 1720.3 919 93.3
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 0.0e+00 1614.0 920 86.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 0.0e+00 1443.7 905 80.2
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 0.0e+00 1384.0 840 82.3
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 4.5e-292 1008.1 938 56.3
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 9.3e-290 1000.3 928 56.2
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 4.1e-285 984.9 969 55.6
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 2.6e-284 982.2 941 56.0
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 6.7e-280 967.6 957 53.5
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.8e-277 959.5 603 80.8
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 2.5e-274 949.1 940 53.8
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.2e-268 930.2 943 52.8
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.5e-268 929.9 988 51.1
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 6.1e-265 917.9 920 52.3
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.3e-264 916.0 922 53.3
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.3e-264 916.0 956 52.4
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 3.9e-264 915.2 933 53.1
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 1.1e-261 907.1 881 54.3
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 7.7e-260 901.0 920 52.6
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 6.5e-259 897.9 977 51.0
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 3.2e-258 895.6 895 53.7
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 5.5e-258 894.8 897 54.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 4.0e-256 888.6 908 53.4
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 4.4e-255 885.2 912 52.4
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.4e-253 879.4 938 51.1
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 2.4e-253 879.4 728 61.0
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 5.3e-253 878.2 887 53.4
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 2.2e-251 872.8 895 51.3
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 4.2e-250 868.6 897 52.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 7.2e-250 867.8 883 52.2
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 3.0e-248 862.4 934 50.5
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.2e-247 860.5 889 51.7
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 2.0e-247 859.8 732 59.4
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.6e-247 859.4 945 50.5
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 2.2e-246 856.3 723 59.1
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-242 844.0 732 58.7
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.2e-239 833.9 937 49.5
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 4.9e-238 828.6 891 50.3
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 5.4e-237 825.1 892 51.5
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.6e-236 823.5 724 56.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 2.9e-235 819.3 773 56.3
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 5.0e-235 818.5 881 50.1
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 8.6e-235 817.8 877 49.8
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 9.5e-234 814.3 896 50.9
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.2e-233 813.9 725 57.4
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 1.6e-233 813.5 724 56.6
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 1.6e-233 813.5 881 49.8
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 1.4e-232 810.4 727 58.0
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 1.4e-232 810.4 948 48.4
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 1.8e-232 810.1 881 49.9
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 4.0e-232 808.9 752 55.1
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 7.5e-231 804.7 780 54.6
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 7.5e-231 804.7 901 47.8
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 3.7e-230 802.4 896 49.8
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.4e-229 800.4 958 47.0
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.8e-229 800.0 917 49.1
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 7.0e-229 798.1 894 48.5
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 1.2e-228 797.3 739 55.3
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 3.0e-227 792.7 743 55.0
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 5.0e-227 792.0 958 46.5
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 6.6e-227 791.6 749 54.3
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 1.5e-226 790.4 890 48.5
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.5e-226 790.4 970 47.1
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 5.6e-226 788.5 736 54.9
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 5.6e-226 788.5 743 54.9
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 1.1e-224 784.3 892 48.5
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.3e-222 777.3 693 57.0
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 4.6e-220 768.8 772 52.1
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.0e-219 767.7 741 54.1
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 1.9e-218 763.5 902 48.0
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.1e-216 757.7 703 55.0
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.2e-213 746.1 565 63.7
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 8.6e-211 738.0 742 50.1
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.5e-210 736.5 736 51.1
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 2.5e-210 736.5 743 52.8
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 6.2e-209 731.9 849 47.8
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.3e-206 724.2 726 51.5
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.6e-201 706.1 726 52.8
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 5.2e-200 702.2 725 50.1
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.7e-195 687.2 756 49.9
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.5e-183 647.5 982 42.2
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 1.5e-167 594.3 714 45.2
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 1.7e-153 547.7 489 56.0
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 2.2e-153 547.4 719 42.1
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 5.7e-138 496.1 527 51.0
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 4.0e-131 473.4 799 35.7
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 1.3e-110 405.2 537 44.7
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 1.5e-109 401.7 363 58.1
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 1.8e-91 341.7 818 33.4
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 1.8e-83 315.1 549 39.0
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 4.9e-65 253.8 370 41.1
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 2.7e-47 194.9 93 96.8
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.8e-46 192.2 144 60.4
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 9.7e-45 186.4 178 57.9
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.2e-42 179.5 164 62.2
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.9e-42 177.2 184 56.0
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.2e-40 171.0 164 59.1
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 6.1e-39 167.2 163 56.4
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 3.0e-38 164.9 129 55.0
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 5.3e-35 154.1 135 57.0
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.3e-33 149.4 106 65.1
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 1.3e-28 132.9 76 75.0
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 3.1e-27 128.3 74 70.3
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 1.7e-25 122.5 408 27.7
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.7e-20 104.8 70 70.0
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 8.3e-20 103.6 70 68.6
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.0e-17 96.7 72 66.7
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 5.7e-13 80.9 70 51.4
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 1.3e-12 79.7 62 58.1
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 2.4e-11 75.5 326 24.5
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 2.4e-11 75.5 199 31.2
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 1.2e-10 73.2 275 27.3
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.6e-10 72.8 328 22.9
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 2.0e-10 72.4 321 25.2
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.7e-10 72.0 320 25.0
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 2.7e-10 72.0 320 25.0
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 5.9e-10 70.9 60 63.3
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 5.9e-10 70.9 320 24.7
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 1.0e-09 70.1 326 22.1
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 1.0e-09 70.1 326 22.1
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 3.8e-09 68.2 315 23.8
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 5.0e-09 67.8 335 23.6
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 6.6e-09 67.4 318 23.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 8.6e-09 67.0 425 22.1
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 8.6e-09 67.0 334 24.0
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 8.6e-09 67.0 338 26.3
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 1.1e-08 66.6 333 23.7
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 1.5e-08 66.2 200 25.5
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 1.9e-08 65.9 198 25.3
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.9e-08 65.9 212 25.0
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 1.9e-08 65.9 217 24.4
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 3.3e-08 65.1 318 23.6
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 4.2e-08 64.7 276 22.5
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 4.2e-08 64.7 201 26.4
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 5.5e-08 64.3 318 23.0
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 5.5e-08 64.3 316 23.1
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 5.5e-08 64.3 334 23.7
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 5.5e-08 64.3 198 24.7
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 7.2e-08 63.9 270 26.3
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 7.2e-08 63.9 280 26.1
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 7.2e-08 63.9 352 25.6
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 9.5e-08 63.5 212 25.0
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.2e-07 63.2 197 23.9
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 1.2e-07 63.2 315 24.1
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.6e-07 62.8 282 23.0
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 2.1e-07 62.4 251 26.3
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.1e-07 62.4 213 24.9
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 2.1e-07 62.4 212 24.5
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 2.8e-07 62.0 250 26.0
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 2.8e-07 62.0 198 23.2
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 3.6e-07 61.6 211 27.0
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 3.6e-07 61.6 192 25.0
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 4.7e-07 61.2 242 27.7
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 8.0e-07 60.5 315 21.9
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 8.0e-07 60.5 197 26.4
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 8.0e-07 60.5 212 24.1
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 1.0e-06 60.1 193 24.4
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 1.0e-06 60.1 194 24.7
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 1.4e-06 59.7 194 28.9
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 1.4e-06 59.7 193 24.9
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.8e-06 59.3 232 24.1
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 2.3e-06 58.9 193 23.8
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 3.0e-06 58.5 193 23.8
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 3.0e-06 58.5 193 24.4
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 3.0e-06 58.5 197 22.8
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 3.0e-06 58.5 212 22.6
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 4.0e-06 58.2 195 29.2
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 4.0e-06 58.2 216 23.1
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 4.0e-06 58.2 211 24.2
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 4.0e-06 58.2 199 24.1
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 5.2e-06 57.8 197 22.8
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 5.2e-06 57.8 198 23.7
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 5.2e-06 57.8 200 25.0
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 6.8e-06 57.4 198 23.2


User provided reference genes

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