Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 8.5e-200 700.3 394 100.0
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 5.7e-196 687.6 394 93.7
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 2.0e-193 679.1 394 93.9
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.6e-169 599.7 406 81.0
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 8.6e-168 594.0 387 81.9
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 1.1e-159 567.0 436 73.4
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 5.1e-136 488.4 390 72.3
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 4.3e-135 485.3 397 70.3
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.1e-133 480.7 395 69.1
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 2.4e-133 479.6 393 68.2
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 7.6e-132 474.6 405 67.9
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 1.3e-131 473.8 384 69.5
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 3.8e-131 472.2 374 69.0
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 2.5e-130 469.5 391 67.8
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 4.6e-129 465.3 390 67.4
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 7.9e-129 464.5 380 63.9
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 1.0e-128 464.2 383 66.3
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 1.3e-128 463.8 397 65.7
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 1.8e-128 463.4 360 72.8
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 5.1e-128 461.8 370 65.9
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 6.7e-128 461.5 381 65.6
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 1.5e-127 460.3 368 65.2
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 5.7e-127 458.4 378 68.0
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 5.7e-127 458.4 455 60.9
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 7.4e-127 458.0 381 66.1
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 1.3e-126 457.2 371 72.0
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 1.6e-126 456.8 390 65.4
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 4.8e-126 455.3 377 63.9
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 6.3e-126 454.9 372 68.5
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 8.2e-126 454.5 397 70.3
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 8.2e-126 454.5 393 62.6
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-125 454.1 377 63.7
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.1e-125 454.1 377 63.7
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 1.1e-125 454.1 385 67.0
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 1.8e-125 453.4 370 69.2
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 2.4e-125 453.0 377 71.9
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 3.1e-125 452.6 388 63.4
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 5.3e-125 451.8 377 63.4
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 9.0e-125 451.1 377 63.4
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 1.2e-124 450.7 385 63.4
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 1.5e-124 450.3 380 69.2
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 2.6e-124 449.5 392 63.3
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 3.4e-124 449.1 401 62.3
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 4.5e-124 448.7 407 64.9
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 7.6e-124 448.0 368 64.7
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 7.6e-124 448.0 371 70.9
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 7.6e-124 448.0 398 62.3
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 7.6e-124 448.0 372 72.8
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 1.7e-123 446.8 384 62.0
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 1.1e-122 444.1 392 69.9
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.4e-122 443.7 406 67.7
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 2.5e-122 443.0 319 75.2
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 3.2e-122 442.6 393 62.3
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 7.2e-122 441.4 395 69.4
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 7.2e-122 441.4 377 62.3
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 1.2e-121 440.7 402 59.2
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 1.2e-121 440.7 403 65.5
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 2.1e-121 439.9 389 69.9
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 6.1e-121 438.3 393 67.4
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 6.1e-121 438.3 392 65.8
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 2.2e-118 429.9 375 63.5
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 1.8e-117 426.8 388 60.3
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 1.8e-117 426.8 388 60.3
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 4.1e-117 425.6 385 59.2
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 4.1e-117 425.6 385 59.2
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 2.0e-116 423.3 400 61.2
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 2.6e-116 422.9 382 58.4
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.6e-116 422.9 379 59.9
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 4.5e-116 422.2 392 57.4
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 4.5e-116 422.2 390 57.2
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 7.7e-116 421.4 383 58.5
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 7.7e-116 421.4 275 74.2
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 2.9e-115 419.5 369 66.1
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.9e-114 416.8 274 75.2
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 1.2e-113 414.1 287 72.1
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 1.6e-113 413.7 375 57.9
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.8e-112 410.2 381 60.6
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 3.9e-112 409.1 398 61.8
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 3.3e-111 406.0 405 57.3
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 1.7e-110 403.7 388 57.0
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 6.3e-110 401.7 395 57.0
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 6.9e-109 398.3 364 58.5
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 7.7e-108 394.8 220 83.2
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 2.2e-107 393.3 385 56.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 2.5e-106 389.8 275 71.6
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 3.2e-106 389.4 398 58.5
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 9.4e-106 387.9 386 59.8
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 5.2e-104 382.1 294 72.4
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 8.8e-104 381.3 284 74.6
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 1.3e-102 377.5 400 56.8
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 8.2e-102 374.8 290 66.2
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 1.1e-101 374.4 278 66.5
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 7.7e-100 368.2 295 63.1
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 1.0e-99 367.9 293 64.5
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 2.5e-98 363.2 406 56.4
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.4e-93 347.4 338 55.0
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 5.9e-92 342.0 202 80.2
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 5.0e-91 339.0 421 55.1
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 6.8e-88 328.6 254 67.3
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 1.7e-86 323.9 264 63.3
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 3.7e-86 322.8 267 59.9
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 1.1e-85 321.2 244 66.0
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 3.6e-81 306.2 399 54.4
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 3.6e-81 306.2 198 75.8
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.0e-80 304.7 311 54.7
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 2.2e-78 297.0 236 66.1
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 1.2e-73 281.2 380 47.9
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 1.4e-69 267.7 140 88.6
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 2.1e-65 253.8 142 81.0
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 7.5e-63 245.4 225 53.3
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 1.9e-61 240.7 262 50.0
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.2e-57 228.0 257 52.5
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 6.2e-57 225.7 285 48.8
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 2.1e-44 184.1 194 46.4
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 3.4e-39 166.8 307 34.9
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 7.6e-31 139.0 194 36.1
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 4.2e-29 133.3 147 55.1
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 3.9e-27 126.7 156 55.1
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 2.5e-21 107.5 85 65.9
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 1.8e-11 74.7 161 34.2
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 9.7e-10 68.9 105 43.8
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 4.1e-08 63.5 130 40.8
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 4.5e-07 60.1 34 76.5


User provided reference genes

Program Settings