Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 3.4e-145 518.5 288 100.0
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 4.7e-139 498.0 288 96.5
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.1e-131 472.6 288 92.7
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.2e-120 436.0 291 78.0
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 3.2e-119 432.2 289 85.1
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.6e-107 392.1 288 74.3
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 9.0e-98 360.9 288 70.8
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 4.5e-97 358.6 292 63.0
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.8e-96 355.5 290 64.8
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 8.4e-96 354.4 290 62.8
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 4.2e-95 352.1 288 63.5
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.1e-94 349.7 290 66.6
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.7e-94 349.4 286 66.8
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.6e-94 348.6 289 63.0
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.6e-94 348.6 289 63.0
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 4.6e-94 348.6 288 68.1
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.0e-93 347.4 235 71.1
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 6.7e-93 344.7 291 62.5
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.9e-92 343.2 297 66.3
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.9e-92 343.2 297 66.3
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.9e-92 343.2 292 60.6
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.3e-92 342.4 247 67.2
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.4e-92 341.3 292 60.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 7.4e-92 341.3 290 62.1
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.6e-92 340.9 292 60.3
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.6e-91 340.1 291 60.1
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 8.1e-91 337.8 289 61.6
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.4e-90 337.0 288 59.7
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.4e-90 337.0 291 59.5
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.8e-90 336.7 291 59.8
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 6.9e-90 334.7 291 59.8
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.2e-89 334.0 244 64.3
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.2e-89 334.0 288 59.7
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.5e-89 333.6 289 65.7
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 2.0e-89 333.2 286 61.2
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 2.6e-89 332.8 290 58.6
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.4e-89 332.4 291 59.1
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 7.6e-89 331.3 290 64.5
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.2e-88 329.7 272 62.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.2e-88 329.7 292 58.9
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 4.9e-88 328.6 295 58.0
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 8.4e-88 327.8 300 66.3
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.4e-87 327.0 288 58.7
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 4.2e-87 325.5 288 59.0
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 5.5e-87 325.1 289 57.1
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 9.3e-87 324.3 248 62.9
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.1e-86 323.2 296 57.1
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.1e-86 323.2 296 58.1
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 3.5e-86 322.4 287 59.6
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.0e-85 320.9 320 55.3
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.0e-85 320.9 286 59.1
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 1.3e-85 320.5 294 59.2
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.0e-85 319.3 304 54.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.5e-84 317.0 293 58.7
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.9e-84 316.6 286 57.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.5e-84 316.2 345 49.9
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.5e-84 316.2 247 60.7
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.5e-84 316.2 285 63.2
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 3.3e-84 315.8 293 56.7
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 3.3e-84 315.8 292 54.8
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 3.3e-84 315.8 247 61.9
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 3.3e-84 315.8 297 57.2
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 4.3e-84 315.5 286 56.3
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 5.7e-84 315.1 293 56.7
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 5.7e-84 315.1 296 56.4
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 7.4e-84 314.7 293 56.3
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 7.4e-84 314.7 293 56.3
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 9.6e-84 314.3 276 66.3
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.3e-83 313.9 293 56.3
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.1e-83 313.2 286 57.3
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.8e-83 312.8 248 62.1
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.8e-83 312.0 283 56.2
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 6.3e-83 311.6 260 61.9
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 8.2e-83 311.2 287 54.4
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.4e-82 309.7 247 61.9
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.4e-82 309.7 286 56.6
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 3.1e-82 309.3 250 62.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.1e-82 309.3 274 59.1
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.1e-82 308.9 263 62.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.2e-81 307.4 285 55.1
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.0e-80 304.3 294 54.8
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.0e-80 304.3 228 63.2
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-80 303.1 317 52.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.8e-80 302.4 263 59.7
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.8e-80 302.4 286 55.6
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 5.0e-80 302.0 291 54.6
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-79 300.8 286 54.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 7.2e-79 298.1 275 57.8
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 2.1e-78 296.6 207 68.6
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.1e-78 295.0 260 57.7
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.3e-77 293.1 233 58.8
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.5e-76 290.4 283 53.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 3.3e-76 289.3 287 51.9
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.3e-75 287.3 288 50.3
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.3e-75 287.3 229 61.1
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-75 287.0 251 59.0
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 3.7e-75 285.8 328 49.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 9.0e-74 281.2 239 59.8
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.0e-72 277.7 276 54.3
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.4e-71 273.9 208 62.0
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.6e-70 270.4 160 83.8
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.6e-70 270.4 221 62.9
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 3.6e-70 269.2 233 56.7
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.6e-70 268.9 213 60.6
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 8.2e-67 258.1 296 48.6
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.1e-66 255.8 221 62.0
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 5.5e-63 245.4 225 56.0
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.0e-61 241.1 250 52.4
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 2.0e-60 236.9 277 47.7
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.6e-57 226.5 122 86.9
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.7e-54 216.5 231 59.7
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 2.7e-54 216.5 189 55.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 7.5e-52 208.4 201 53.7
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 6.3e-51 205.3 181 57.5
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 6.3e-51 205.3 148 68.9
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.0e-49 200.3 202 60.4
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 5.9e-49 198.7 158 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.2e-48 196.8 242 40.9
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.5e-48 195.3 225 49.8
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 6.5e-48 195.3 251 40.6
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.1e-47 194.5 245 43.3
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 5.7e-44 182.2 127 66.9
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 9.1e-42 174.9 284 40.8
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.9e-41 172.2 239 43.9
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 2.9e-40 169.9 274 38.3
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.9e-39 167.2 201 43.8
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 5.2e-37 159.1 119 62.2
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.2e-36 157.9 170 50.6
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.8e-36 154.8 107 66.4
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 8.3e-35 151.8 118 62.7
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.8e-32 142.9 296 32.4
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.8e-26 124.0 85 69.4
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.4e-26 122.5 99 60.6
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.1e-23 114.8 159 40.3
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 3.3e-23 113.2 141 46.1
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 2.0e-17 94.0 134 43.3
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 8.1e-14 82.0 234 26.5
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 3.1e-13 80.1 205 28.3
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 3.6e-06 56.6 83 63.9


User provided reference genes

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