Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1421.4 735 100.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1414.1 734 99.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1297.7 697 96.3
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1273.1 704 94.3
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1259.2 691 94.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1252.7 708 92.4
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1206.8 695 88.3
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1197.6 716 89.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1195.6 693 88.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 691 86.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 693 86.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 693 86.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 704 84.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 693 85.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 694 85.9
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 695 85.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 695 85.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 692 84.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 666 92.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 690 85.8
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1164.1 693 84.8
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 690 85.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 690 84.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 690 84.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 692 85.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 690 84.6
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 721 82.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 700 84.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 687 86.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 704 83.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1152.1 693 83.5
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 693 84.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 693 84.3
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 695 83.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 691 83.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 693 83.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 695 84.0
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 688 83.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 700 83.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 700 83.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 700 83.3
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 693 83.5
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 693 83.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1146.0 689 84.5
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 716 82.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 693 83.5
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 699 83.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 693 82.0
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 699 84.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 691 84.2
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 691 84.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1135.6 699 82.8
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 691 83.4
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 700 82.9
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 668 86.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 699 83.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 668 85.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1127.1 695 83.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 693 83.3
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 688 82.3
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 699 82.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 688 82.1
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 770 77.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 700 82.3
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 685 82.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 699 82.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 691 81.3
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1119.8 717 80.6
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 691 81.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 701 80.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 701 80.5
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 701 80.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 691 81.3
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 689 82.0
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 731 79.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 713 80.9
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 701 80.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 691 81.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 695 82.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 701 80.2
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1112.4 691 81.8
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 711 79.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 702 80.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 691 81.8
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 689 81.0
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1106.7 695 79.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1104.4 690 82.2
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 692 81.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 698 79.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1094.3 698 79.5
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 5.0e-312 1074.7 731 77.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.0e-311 1073.2 698 77.9
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 3.6e-308 1061.2 733 74.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 6.1e-308 1060.4 665 79.7
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 6.1e-308 1060.4 686 77.4
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.0e-307 1059.7 693 77.1
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.2e-305 1052.0 711 76.2
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 7.4e-298 1026.9 693 75.3
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.8e-291 1005.7 748 69.4
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.0e-283 978.4 591 82.7
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.9e-278 961.8 631 78.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 8.6e-278 960.3 623 78.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.2e-276 956.4 696 68.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.4e-274 948.3 689 68.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.4e-274 948.3 689 68.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 5.6e-269 931.0 695 68.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.0e-266 922.5 691 67.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-264 915.2 584 77.9
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 6.2e-260 901.0 589 78.8
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.4e-259 899.8 683 70.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 5.8e-258 894.4 566 78.8
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.8e-258 893.6 554 81.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 6.6e-246 854.4 504 86.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 2.6e-242 842.4 676 67.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.6e-230 801.2 485 83.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 7.1e-224 781.2 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 8.2e-212 741.1 682 55.3
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.5e-200 701.8 423 81.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-193 680.6 466 78.1
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.6e-154 550.8 733 43.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.1e-151 540.4 328 79.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 7.8e-146 521.9 776 38.1
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.2e-133 481.5 280 84.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 7.6e-125 452.2 273 81.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 6.6e-121 439.1 269 81.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.1e-119 434.1 359 62.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.4e-110 404.1 740 34.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 4.0e-110 403.3 253 79.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.5e-109 399.8 237 82.7
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 9.9e-109 398.7 233 82.0
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.0e-106 389.4 261 78.9
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.5e-96 358.2 245 77.1
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.4e-77 293.9 181 77.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 5.0e-76 290.0 215 69.8
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.0e-73 282.3 193 79.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-68 264.2 148 81.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.1e-66 258.1 195 68.7
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.5e-59 234.6 192 69.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 5.5e-59 233.4 155 67.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.2e-57 226.9 167 70.7
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.1e-54 217.6 122 93.4
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 7.0e-54 216.5 156 71.2
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 4.5e-53 213.8 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.1e-51 209.1 197 60.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.4e-46 192.2 114 85.1
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.1e-46 190.7 488 28.1
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.5e-43 180.3 102 84.3
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.8e-40 169.5 111 82.9
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.6e-36 156.4 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 8.6e-28 129.8 100 67.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 5.6e-27 127.1 151 51.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-25 122.9 100 64.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-25 122.9 100 64.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.0e-24 118.6 80 75.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 8.3e-23 113.2 72 77.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.3e-20 105.9 63 76.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.7e-20 105.5 117 53.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.6e-20 103.2 74 71.6
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.3e-19 100.9 77 64.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.6e-19 100.5 57 82.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.6e-18 99.0 59 78.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 2.1e-18 98.6 66 66.7
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.8e-17 95.5 93 59.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.3e-15 89.4 65 72.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.8e-10 71.6 62 64.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 3.6e-10 71.2 78 46.2
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.4e-08 64.7 40 80.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.2e-06 57.8 57 54.4


User provided reference genes

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