Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen02g021340 Solanum pennellii HOM05D002720 ORTHO05D002901 1.8e-39 165.2 73 100.0
PGSC0003DMG400028430 Solanum tuberosum HOM05D002720 ORTHO05D002901 3.3e-20 101.3 47 91.5
CAN.G650.21 Capsicum annuum HOM05D002720 ORTHO05D002901 1.4e-18 95.9 47 87.2
Solyc03g118380.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 1.4e-18 95.9 47 87.2
Sopen02g019870 Solanum pennellii HOM05D002720 ORTHO05D002901 1.4e-18 95.9 47 87.2
Sopen03g037280 Solanum pennellii HOM05D002720 ORTHO05D002901 1.4e-18 95.9 47 87.2
PGSC0003DMG400008310 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.4e-18 95.9 47 87.2
PGSC0003DMG400014251 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.4e-18 95.9 47 87.2
PGSC0003DMG400027588 Solanum tuberosum HOM05D002720 ORTHO05D002901 2.3e-18 95.1 46 89.1
Nitab4.5_0000695g0070 Nicotiana tabacum HOM05D002720 ORTHO05D002901 8.9e-18 93.2 47 80.9
Nitab4.5_0006814g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 8.9e-18 93.2 47 80.9
Peaxi162Scf00065g00144 Petunia axillaris HOM05D002720 ORTHO05D002901 8.9e-18 93.2 47 83.0
Solyc06g033895.1 Solanum lycopersicum HOM05D002720 ORTHO05D002901 4.4e-17 90.9 46 82.6
Sopen06g014100 Solanum pennellii HOM05D002720 ORTHO05D002901 2.2e-16 88.6 46 80.4
CAN.G2602.2 Capsicum annuum HOM05D002720 ORTHO05D002901 4.1e-15 84.3 47 74.5
CSS0039978 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 1.6e-14 82.4 45 73.3
BcaB04g18254 Brassica carinata HOM05D002720 ORTHO05D002901 2.0e-14 82.0 47 70.2
Oeu030668.1 Olea europaea HOM05D002720 ORTHO05D002901 2.0e-14 82.0 45 71.1
Actinidia40090 Actinidia chinensis HOM05D002720 ORTHO05D002901 2.7e-14 81.6 45 68.9
Dinv44630 Davidia involucrata HOM05D002720 ORTHO05D002901 2.7e-14 81.6 45 71.1
Aa31LG9G2670 Aethionema arabicum HOM05D002720 ORTHO05D002901 4.6e-14 80.9 44 75.0
CARHR221020 Cardamine hirsuta HOM05D002720 ORTHO05D002901 5.9e-14 80.5 47 68.1
BcaC07g37842 Brassica carinata HOM05D002720 ORTHO05D002901 7.8e-14 80.1 47 68.1
A08p11370 Brassica napus HOM05D002720 ORTHO05D002901 7.8e-14 80.1 47 68.1
BolC8t48229H Brassica oleracea HOM05D002720 ORTHO05D002901 7.8e-14 80.1 47 68.1
BraA08t33130Z Brassica rapa HOM05D002720 ORTHO05D002901 7.8e-14 80.1 47 68.1
Sopen06g014110 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-13 79.3 44 75.0
Thhalv10026369m.g Eutrema salsugineum HOM05D002720 ORTHO05D002901 1.7e-13 79.0 47 70.2
SalBow2G1684 Salvia bowleyana HOM05D002720 ORTHO05D002901 1.7e-13 79.0 44 72.7
Cpa.g.sc2.369 Carica papaya HOM05D002720 ORTHO05D002901 2.3e-13 78.6 45 66.7
Solyc06g033890.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.3e-13 78.6 41 80.5
AL7G41430 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 2.9e-13 78.2 47 68.1
AT4G14660 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 3.9e-13 77.8 47 66.0
Carub.0007s2754 Capsella rubella HOM05D002720 ORTHO05D002901 3.9e-13 77.8 44 68.2
Rhsim04G0190900 Rhododendron simsii HOM05D002720 ORTHO05D002901 3.9e-13 77.8 45 68.9
MSTRG.4098 Avicennia marina HOM05D002720 ORTHO05D002901 5.0e-13 77.4 45 71.1
Eucgr.H03255 Eucalyptus grandis HOM05D002720 ORTHO05D002901 6.6e-13 77.0 45 68.9
Eucgr.L02850 Eucalyptus grandis HOM05D002720 ORTHO05D002901 6.6e-13 77.0 45 68.9
Hma1.2p1_0065F.1_g035630 Hydrangea macrophylla HOM05D002720 ORTHO05D002901 6.6e-13 77.0 45 68.9
vmacro08407 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 6.6e-13 77.0 45 68.9
vmacro08613 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 6.6e-13 77.0 45 68.9
MSTRG.9927 Avicennia marina HOM05D002720 ORTHO05D002901 8.6e-13 76.6 47 63.8
Manes.07G037400 Manihot esculenta HOM05D002720 ORTHO05D002901 8.6e-13 76.6 45 64.4
MELO3C026776.2 Cucumis melo HOM05D002720 ORTHO05D002901 1.1e-12 76.3 45 62.2
CsaV3_2G013070 Cucumis sativus L. HOM05D002720 ORTHO05D002901 1.1e-12 76.3 45 62.2
Sp7g12770 Schrenkiella parvula HOM05D002720 ORTHO05D002901 1.1e-12 76.3 47 66.0
Sed0027773 Sechium edule HOM05D002720 ORTHO05D002901 1.1e-12 76.3 45 62.2
COL.COLO4_20716 Corchorus olitorius HOM05D002720 ORTHO05D002901 1.5e-12 75.9 45 66.7
SGA_v2.0_scaffold88G27291 Striga asiatica HOM05D002720 ORTHO05D002901 1.5e-12 75.9 45 66.7
GSVIVG01018108001 Vitis vinifera HOM05D002720 ORTHO05D002901 1.5e-12 75.9 45 64.4
Eucgr.H03254 Eucalyptus grandis HOM05D002720 ORTHO05D002901 1.9e-12 75.5 44 65.9
Lj6C656T10 Lonicera japonica HOM05D002720 ORTHO05D002901 1.9e-12 75.5 45 66.7
Rhsim04G0192700 Rhododendron simsii HOM05D002720 ORTHO05D002901 1.9e-12 75.5 45 66.7
Thecc.10G145800 Theobroma cacao HOM05D002720 ORTHO05D002901 1.9e-12 75.5 45 68.9
CSS0035657 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 2.5e-12 75.1 45 68.9
Cc02_g21580 Coffea canephora HOM05D002720 ORTHO05D002901 3.3e-12 74.7 45 68.9
MD16G1207700 Malus domestica HOM05D002720 ORTHO05D002901 3.3e-12 74.7 47 63.8
QL09p012558 Quercus lobata HOM05D002720 ORTHO05D002901 4.3e-12 74.3 45 60.0
SHI00593 Sapria himalayana HOM05D002720 ORTHO05D002901 4.3e-12 74.3 45 64.4
Thecc.10G145600 Theobroma cacao HOM05D002720 ORTHO05D002901 4.3e-12 74.3 45 66.7
Thecc.10G146200 Theobroma cacao HOM05D002720 ORTHO05D002901 4.3e-12 74.3 45 66.7
Prupe.1G030000 Prunus persica HOM05D002720 ORTHO05D002901 9.5e-12 73.2 45 64.4
PGR004G0769 Punica granatum HOM05D002720 ORTHO05D002901 9.5e-12 73.2 45 62.2
PGR119G0175 Punica granatum HOM05D002720 ORTHO05D002901 9.5e-12 73.2 45 62.2
Duzib114G1034 Durio zibethinus HOM05D002720 ORTHO05D002901 1.2e-11 72.8 45 64.4
Gohir.A05G283100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 1.6e-11 72.4 45 64.4
Gohir.D05G284100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 1.6e-11 72.4 45 64.4
Gorai.009G298700 Gossypium raimondii HOM05D002720 ORTHO05D002901 1.6e-11 72.4 45 64.4
QL09p012554 Quercus lobata HOM05D002720 ORTHO05D002901 1.6e-11 72.4 45 62.2
SHI27528 Sapria himalayana HOM05D002720 ORTHO05D002901 1.6e-11 72.4 45 62.2
Peaxi162Scf00065g00145 Petunia axillaris HOM05D002720 ORTHO05D002901 2.1e-11 72.0 47 61.7
Potri.010G077300 Populus trichocarpa HOM05D002720 ORTHO05D002901 2.1e-11 72.0 45 60.0
SalBow6G3689 Salvia bowleyana HOM05D002720 ORTHO05D002901 2.1e-11 72.0 45 62.2
Atru.chr4.2236 Acer truncatum HOM05D002720 ORTHO05D002901 2.8e-11 71.6 45 60.0
DCAR_002773 Daucus carota HOM05D002117 ORTHO05D002151 2.8e-11 71.6 45 62.2
Duzib114G0436 Durio zibethinus HOM05D002720 ORTHO05D002901 2.8e-11 71.6 45 62.2
Lalb_Chr06g0169331 Lupinus albus HOM05D002720 ORTHO05D002901 2.8e-11 71.6 45 64.4
Phvul.L002059 Phaseolus vulgaris HOM05D002720 ORTHO05D002901 2.8e-11 71.6 45 62.2
unitig_899.g14889 Utricularia gibba HOM05D002720 ORTHO05D002901 2.8e-11 71.6 45 60.0
DCAR_027272 Daucus carota HOM05D002720 ORTHO05D002901 3.6e-11 71.2 45 60.0
Potri.008G161700 Populus trichocarpa HOM05D002720 ORTHO05D002901 3.6e-11 71.2 45 60.0
RcHm_v2.0_Chr4g0390271 Rosa chinensis HOM05D002720 ORTHO05D002901 3.6e-11 71.2 45 64.4
VMungo0720G2991 Vigna mungo HOM05D002720 ORTHO05D002901 3.6e-11 71.2 45 62.2
FvH4_4g12050 Fragaria vesca HOM05D002720 ORTHO05D002901 4.7e-11 70.9 45 62.2
FAN07G0794 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.7e-11 70.9 45 62.2
FAN12G2103 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.7e-11 70.9 45 62.2
FAN12G3038 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.7e-11 70.9 45 62.2
FAN17G1273 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.7e-11 70.9 45 62.2
Lj5g0020726 Lotus japonicus HOM05D002720 ORTHO05D002901 6.1e-11 70.5 45 64.4
Solyc09g048970.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 6.1e-11 70.5 35 88.6
Glyma.20G204700 Glycine max HOM05D002720 ORTHO05D002901 8.0e-11 70.1 45 62.2
Lalb_Chr16g0384831 Lupinus albus HOM05D002720 ORTHO05D002901 8.0e-11 70.1 45 62.2
Nn3g19523 Nelumbo nucifera HOM05D002720 ORTHO05D002901 8.0e-11 70.1 45 60.0
CiPaw.12G002900 Carya illinoinensis HOM05D002720 ORTHO05D002901 1.4e-10 69.3 45 62.2
FvH4_4g02560 Fragaria vesca HOM05D002720 ORTHO05D002901 1.4e-10 69.3 47 61.7
FAN12G1351 Fragaria x ananassa HOM05D002720 ORTHO05D002901 1.4e-10 69.3 47 61.7
Sopen08g015260 Solanum pennellii HOM05D002720 ORTHO05D002901 1.4e-10 69.3 36 83.3
TWI73G0137 Tripterygium wilfordii HOM05D002720 ORTHO05D002901 1.4e-10 69.3 47 57.4
CDE09G0699 Ceratophyllum demersum HOM05D002720 ORTHO05D002901 3.1e-10 68.2 45 62.2
ATR0665G044 Amborella trichopoda HOM05D002720 ORTHO05D002901 5.2e-10 67.4 46 58.7
Carub.0003s2303 Capsella rubella HOM05D002720 ORTHO05D002901 5.2e-10 67.4 43 60.5
MBI04_g39240_MAGBIO Magnolia biondii HOM05D002720 ORTHO05D002901 6.8e-10 67.0 45 57.8
unitig_899.g14887 Utricularia gibba HOM05D002720 ORTHO05D002901 8.9e-10 66.6 48 54.2
COL.COLO4_15186 Corchorus olitorius HOM05D002720 ORTHO05D002901 1.2e-09 66.2 45 55.6
TAR633G1171 Trochodendron aralioides HOM05D002720 ORTHO05D002901 1.2e-09 66.2 47 51.1
Nn1g02586 Nelumbo nucifera HOM05D002720 ORTHO05D002901 2.0e-09 65.5 47 53.2
AUR62019525 Chenopodium quinoa HOM05D002720 ORTHO05D002901 3.4e-09 64.7 52 50.0
AUR62036114 Chenopodium quinoa HOM05D002720 ORTHO05D002901 3.4e-09 64.7 52 50.0
Sabra10G0031500 Salix brachista HOM05D002720 ORTHO05D002901 3.4e-09 64.7 45 53.3
Ah.09g233110 Amaranthus hybridus HOM05D002720 ORTHO05D002901 4.4e-09 64.3 52 46.2
Migut.G00425 Erythranthe guttata HOM05D002720 ORTHO05D002901 5.8e-09 63.9 48 60.4
Migut.G00434 Erythranthe guttata HOM05D002720 ORTHO05D002901 5.8e-09 63.9 42 61.9
PSO339G3626 Papaver somniferum HOM05D002720 ORTHO05D002901 7.5e-09 63.5 45 57.8
PSO384G2822 Papaver somniferum HOM05D002720 ORTHO05D002901 7.5e-09 63.5 45 57.8
EL10Ac9g20857 Beta vulgaris HOM05D002720 ORTHO05D002901 9.8e-09 63.2 46 54.3
CARHR098840 Cardamine hirsuta HOM05D002720 ORTHO05D002901 9.8e-09 63.2 47 53.2
Ciclev10006012m.g Citrus clementina HOM05D002720 ORTHO05D002901 9.8e-09 63.2 45 51.1
Lsat_1_v5_gn_3_125620 Lactuca sativa HOM05D002720 ORTHO05D002901 9.8e-09 63.2 49 55.1
SGA_v2.0_scaffold88G27322 Striga asiatica HOM05D002720 ORTHO05D002901 9.8e-09 63.2 48 58.3
THA.LOC104808579 Tarenaya hassleriana HOM05D002720 ORTHO05D002901 9.8e-09 63.2 44 52.3
HanXRQChr13g0424551 Helianthus annuus HOM05D002720 ORTHO05D002901 1.7e-08 62.4 46 58.7
Solyc09g083340.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.2e-08 62.0 43 55.8
Sopen09g032260 Solanum pennellii HOM05D002720 ORTHO05D002901 2.2e-08 62.0 43 55.8
Duzib151G0174 Durio zibethinus HOM05D002720 ORTHO05D002901 3.7e-08 61.2 44 50.0
HanXRQChr03g0092471 Helianthus annuus HOM05D002720 ORTHO05D002901 3.7e-08 61.2 46 58.7
Duzib151G1214 Durio zibethinus HOM05D002720 ORTHO05D002901 4.9e-08 60.8 44 47.7
Os05g0224700 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 4.9e-08 60.8 47 51.1
CAN.G1007.17 Capsicum annuum HOM05D002720 ORTHO05D002901 6.4e-08 60.5 41 53.7
Hund05271 Selenicereus undatus HOM05D002720 ORTHO05D002901 6.4e-08 60.5 45 48.9
Sc19g0003810 Simmondsia chinensis HOM05D002720 ORTHO05D002901 6.4e-08 60.5 45 51.1
AL3G37250 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 8.3e-08 60.1 43 55.8
Aqoxy5G00329 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 1.1e-07 59.7 44 54.5
MD13G1206600 Malus domestica HOM05D002720 ORTHO05D002901 1.1e-07 59.7 42 52.4
Os05g0157100 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 1.1e-07 59.7 47 53.2
AT3G22900 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 1.4e-07 59.3 43 53.5
BcaC09g49218 Brassica carinata HOM05D002720 ORTHO05D002901 1.4e-07 59.3 43 58.1
BraA01t03351Z Brassica rapa HOM05D002720 ORTHO05D002901 1.4e-07 59.3 43 58.1
Psat6g128440 Pisum sativum HOM05D002720 ORTHO05D002901 1.4e-07 59.3 45 53.3
CAN.G1007.18 Capsicum annuum HOM05D002720 ORTHO05D002901 1.9e-07 58.9 57 42.1
PGSC0003DMG400001129 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.9e-07 58.9 43 53.5
COL.COLO4_15784 Corchorus olitorius HOM05D002720 ORTHO05D002901 2.4e-07 58.5 42 50.0
Sabra10G0031600 Salix brachista HOM05D002720 ORTHO05D002901 2.4e-07 58.5 45 44.4
Atru.chr4.2235 Acer truncatum HOM05D002720 ORTHO05D002901 3.2e-07 58.2 43 48.8
Cfa008382 Carpinus fangiana HOM05D002720 ORTHO05D002901 3.2e-07 58.2 43 46.5
Cfa021571 Carpinus fangiana HOM05D002720 ORTHO05D002901 3.2e-07 58.2 43 46.5
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.2e-07 58.2 45 53.3
Medtr1g475140 Medicago truncatula HOM05D002720 ORTHO05D002901 3.2e-07 58.2 45 53.3
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 4.1e-07 57.8 44 47.7
Gorai.006G246300 Gossypium raimondii HOM05D002720 ORTHO05D002901 4.1e-07 57.8 44 45.5
Potri.010G077200 Populus trichocarpa HOM05D002720 ORTHO05D002901 4.1e-07 57.8 45 44.4
Prupe.1G030200 Prunus persica HOM05D002720 ORTHO05D002901 4.1e-07 57.8 42 52.4
BcaB03g14643 Brassica carinata HOM05D001870 ORTHO05D001797 5.4e-07 57.4 43 58.1
Dinv29916 Davidia involucrata HOM05D002720 ORTHO05D002901 5.4e-07 57.4 43 48.8
Gohir.A09G222701 Gossypium hirsutum HOM05D002720 ORTHO05D002901 7.0e-07 57.0 44 45.5
Gohir.D09G224800 Gossypium hirsutum HOM05D002720 ORTHO05D002901 7.0e-07 57.0 44 45.5
QL06p015591 Quercus lobata HOM05D002720 ORTHO05D002901 7.0e-07 57.0 43 46.5
C01p41270 Brassica napus HOM05D002720 ORTHO05D002901 9.2e-07 56.6 43 55.8
BolC1t04087H Brassica oleracea HOM05D002720 ORTHO05D002901 9.2e-07 56.6 43 55.8
CANSAT78G0519 Cannabis sativa HOM05D002720 ORTHO05D002901 9.2e-07 56.6 46 47.8
A01p32260 Brassica napus HOM05D002720 ORTHO05D002901 1.2e-06 56.2 43 53.5
Zm00001eb282600 Zea mays HOM05D002720 ORTHO05D002901 1.2e-06 56.2 47 46.8
Atru.chr4.2257 Acer truncatum HOM05D002720 ORTHO05D002901 1.6e-06 55.8 33 60.6
CiPaw.02G116800 Carya illinoinensis HOM05D002720 ORTHO05D002901 1.6e-06 55.8 43 48.8
MD16G1207800 Malus domestica HOM05D002720 ORTHO05D002901 2.0e-06 55.5 41 46.3
RcHm_v2.0_Chr4g0390261 Rosa chinensis HOM05D002720 ORTHO05D002901 2.0e-06 55.5 39 51.3
BcaB04g20488 Brassica carinata HOM05D002720 ORTHO05D002901 2.7e-06 55.1 43 53.5
BcaB06g28069 Brassica carinata HOM05D002720 ORTHO05D002901 4.6e-06 54.3 33 60.6
CARHR098850 Cardamine hirsuta HOM05D002720 ORTHO05D002901 4.6e-06 54.3 54 42.6
AUR62019670 Chenopodium quinoa HOM05D002720 ORTHO05D002901 4.6e-06 54.3 52 42.3
Cc03_g04800 Coffea canephora HOM05D002720 ORTHO05D002901 4.6e-06 54.3 44 45.5
ECA240G3546 Erigeron canadensis HOM05D002720 ORTHO05D002901 4.6e-06 54.3 46 52.2
Thecc.04G245600 Theobroma cacao HOM05D002720 ORTHO05D002901 4.6e-06 54.3 42 50.0
TPR.G28896 Trifolium pratense HOM05D002720 ORTHO05D002901 4.6e-06 54.3 45 51.1


User provided reference genes

Program Settings