Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 0.0e+00 1232.6 623 100.0
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 6.1e-301 1036.9 554 96.0
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 8.0e-293 1010.0 554 93.3
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 9.1e-289 996.5 569 90.2
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 2.7e-280 968.4 547 91.2
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 5.0e-271 937.6 534 90.1
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 6.2e-229 797.7 516 80.0
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 9.3e-225 783.9 495 79.8
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 1.6e-224 783.1 498 80.1
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 3.3e-222 775.4 507 78.1
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 3.3e-222 775.4 498 79.1
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 5.6e-222 774.6 527 75.1
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 7.4e-222 774.2 503 79.3
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.6e-221 773.1 521 77.7
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.8e-221 772.3 549 72.1
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 8.1e-221 770.8 555 72.1
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 8.1e-221 770.8 512 77.5
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.1e-220 768.8 497 78.7
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 4.0e-220 768.5 526 75.1
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 2.6e-219 765.8 499 77.6
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 4.5e-219 765.0 497 78.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 5.8e-219 764.6 525 75.2
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 7.6e-219 764.2 516 76.7
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 3.8e-218 761.9 507 76.1
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 3.2e-217 758.8 496 76.8
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.5e-217 758.1 523 73.0
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 5.5e-217 758.1 515 75.0
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 7.1e-217 757.7 510 75.3
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 7.1e-217 757.7 546 71.1
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.2e-216 756.9 464 85.3
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.6e-216 756.5 523 72.3
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.7e-216 755.7 509 75.6
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 4.6e-216 755.0 517 74.3
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 4.6e-216 755.0 496 76.8
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 4.6e-216 755.0 512 76.8
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 6.0e-216 754.6 500 76.6
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.0e-215 753.8 503 76.9
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.0e-215 753.8 509 75.4
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.0e-215 753.8 499 76.8
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.3e-215 752.7 501 75.2
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 2.8e-213 745.7 516 74.6
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 2.8e-213 745.7 498 76.1
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 3.7e-213 745.3 550 70.0
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 3.7e-213 745.3 502 74.3
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 3.7e-213 745.3 515 72.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.2e-213 744.2 539 71.8
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 9.0e-212 740.7 519 75.0
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 1.5e-211 740.0 517 75.0
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 5.9e-211 738.0 505 74.5
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 7.6e-211 737.6 524 72.7
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 1.3e-210 736.9 491 77.6
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 1.1e-209 733.8 574 66.2
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 4.2e-209 731.9 498 72.9
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 7.2e-209 731.1 468 79.1
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 2.1e-208 729.6 491 75.6
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 3.5e-208 728.8 521 72.9
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 6.1e-208 728.0 507 74.2
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 7.9e-208 727.6 501 73.7
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.0e-207 727.2 481 76.7
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.8e-207 726.5 508 74.0
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.8e-207 726.5 490 74.1
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 2.3e-207 726.1 490 73.5
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 6.7e-207 724.5 518 73.6
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.5e-206 723.4 487 73.3
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.5e-206 722.6 488 77.5
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 9.7e-206 720.7 489 73.0
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 1.3e-205 720.3 492 74.4
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 1.6e-205 719.9 538 69.9
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.6e-205 719.9 497 74.2
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 3.7e-205 718.8 508 72.8
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 5.3e-204 714.9 492 74.0
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 2.6e-203 712.6 496 73.2
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 7.7e-203 711.1 510 70.4
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 7.7e-203 711.1 488 73.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.7e-202 709.9 496 72.8
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 1.7e-202 709.9 498 72.7
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 5.0e-202 708.4 499 72.3
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 8.5e-202 707.6 496 72.8
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.4e-201 706.8 499 71.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 2.1e-200 703.0 499 72.1
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 2.1e-200 703.0 502 71.7
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 2.7e-200 702.6 503 71.8
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.7e-200 702.6 499 72.1
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 6.1e-200 701.4 564 67.4
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.4e-199 700.3 499 71.9
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 3.0e-199 699.1 492 72.4
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.1e-199 698.4 499 70.5
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 6.7e-199 698.0 477 74.4
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.3e-198 695.7 497 72.2
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 3.3e-198 695.7 512 71.1
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 3.7e-197 692.2 497 71.2
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.1e-193 680.6 493 70.4
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 7.9e-192 674.5 528 66.5
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 3.9e-191 672.2 641 58.7
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 2.7e-184 649.4 487 68.2
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 8.0e-184 647.9 496 68.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 5.2e-183 645.2 437 74.1
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.4e-180 637.1 513 64.5
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.6e-171 607.1 498 62.7
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 1.6e-171 607.1 480 65.4
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.8e-167 591.3 391 75.2
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.9e-161 573.5 491 60.7
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 9.5e-161 571.2 500 60.4
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 3.0e-146 523.1 501 56.9
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.4e-142 509.6 341 77.7
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.0e-130 471.5 360 71.7
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 4.7e-128 462.6 405 58.5
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.2e-107 394.8 557 43.6
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 2.5e-100 370.5 265 69.1
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 4.8e-96 356.3 286 65.7
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.6e-75 287.0 366 46.7
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 4.7e-75 286.6 280 57.5
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-74 285.0 456 42.3
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 1.4e-74 285.0 177 80.2
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.5e-65 255.0 189 65.1
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.8e-58 231.5 155 74.2
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.4e-55 221.9 142 74.6
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 4.5e-54 216.9 248 47.6
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 7.7e-54 216.1 157 70.7
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 2.6e-49 201.1 134 79.9
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 1.6e-46 191.8 148 70.3
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 2.8e-43 181.0 123 69.1
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 8.9e-42 176.0 146 63.0
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.4e-39 166.8 156 59.0
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.6e-35 155.2 142 62.7
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.6e-35 155.2 142 62.7
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.1e-34 152.5 97 76.3
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.8e-34 151.8 173 52.0
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 1.5e-33 148.7 130 65.4
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 9.8e-33 146.0 198 44.4
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 4.1e-31 140.6 291 36.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 2.4e-23 114.8 127 50.4
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.6e-21 106.3 78 73.1
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.8e-19 101.3 62 77.4
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 7.1e-15 86.7 138 37.7
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 2.7e-14 84.7 116 46.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.0e-13 82.8 65 72.3
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.6e-11 75.5 204 27.0
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 2.1e-11 75.1 62 59.7
Sopen07g031090 Solanum pennellii HOM05D000553 ORTHO05D000460 1.2e-09 69.3 32 87.5
Sopen07g031100 Solanum pennellii HOM05D000553 ORTHO05D000460 1.2e-09 69.3 32 87.5
Solyc07g062910.3 Solanum lycopersicum HOM05D000553 ORTHO05D000460 9.9e-09 66.2 33 81.8
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 7.8e-06 56.6 76 43.4
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 7.8e-06 56.6 187 27.3


User provided reference genes

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