Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1840.9 954 100.0
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1828.5 954 99.2
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1712.2 955 93.3
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1671.0 969 90.8
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1650.6 914 93.7
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1587.0 966 87.5
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1454.5 938 80.5
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1446.8 954 79.4
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1432.5 933 80.6
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1422.5 961 77.7
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1422.5 937 79.5
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1416.7 939 78.1
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1410.2 926 79.5
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1409.0 945 77.9
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1403.7 949 76.9
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1399.8 901 80.2
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1399.0 949 76.6
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1399.0 936 77.6
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1398.3 941 77.0
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1397.9 928 77.0
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1395.9 944 77.6
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1393.6 904 79.5
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1393.3 938 75.8
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1390.9 930 77.3
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1387.9 930 77.3
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1386.7 940 76.1
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1386.7 946 76.8
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1385.9 904 79.0
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1384.4 944 76.5
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1384.4 945 76.2
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1382.9 936 76.9
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1379.0 949 76.1
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1376.3 905 79.0
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1375.9 942 74.8
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1375.9 1038 71.8
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1375.5 975 75.1
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1374.4 894 79.2
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1372.1 944 76.5
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1369.4 943 76.2
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1368.2 933 77.9
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1368.2 842 82.2
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 963 74.7
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1366.3 949 75.1
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1366.3 931 76.8
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1365.9 964 75.1
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1365.1 938 76.2
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1361.3 918 78.3
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1359.0 836 81.8
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1358.6 934 75.1
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1357.4 928 75.0
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1357.0 919 76.9
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1353.6 951 73.9
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1349.0 925 76.0
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1346.6 1045 70.4
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1342.8 902 77.5
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1335.9 948 73.8
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1335.5 946 73.6
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1333.9 888 78.0
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1330.9 948 73.2
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1324.3 930 74.0
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1322.4 935 74.3
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1320.8 959 72.8
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1315.8 933 73.7
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1315.4 948 73.1
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1314.3 947 72.7
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1312.4 932 73.3
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1310.4 961 72.4
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1307.0 953 70.9
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1304.3 948 72.2
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1304.3 923 73.5
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1303.1 972 70.6
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1303.1 1069 66.6
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1299.6 868 75.9
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1294.6 883 76.4
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1292.7 856 77.2
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1291.2 852 77.5
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1290.4 939 71.9
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1286.6 947 71.4
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1274.2 880 74.9
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1243.4 841 74.4
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1224.5 1004 66.6
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1214.5 815 78.0
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1211.4 798 77.9
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1192.2 950 64.7
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1155.2 721 80.9
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1151.7 732 80.2
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1138.6 717 80.3
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 2.4e-304 1048.9 903 59.8
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 2.6e-303 1045.4 863 62.0
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 5.7e-290 1001.1 855 58.9
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 1.0e-262 910.6 871 54.0
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 6.1e-252 874.8 646 70.6
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 1.3e-249 867.1 599 76.3
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 5.4e-248 861.7 584 74.5
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 1.0e-222 777.7 551 74.8
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 6.2e-220 768.5 1081 44.7
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 1.7e-214 750.4 496 75.4
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 3.5e-207 726.1 498 74.5
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 3.1e-203 713.0 553 69.4
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 4.9e-201 705.7 570 61.8
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 4.2e-200 702.6 861 46.2
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 1.9e-189 667.2 853 43.6
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 5.8e-186 655.6 475 73.5
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 7.4e-181 638.6 457 74.8
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 1.0e-177 628.2 429 75.3
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 6.1e-175 619.0 647 54.7
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.2e-162 578.2 339 83.2
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 5.7e-157 559.3 423 68.1
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 3.0e-134 483.8 710 41.8
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 6.8e-118 429.5 289 77.5
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 8.6e-113 412.5 339 66.4
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 3.9e-105 387.1 311 70.1
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 2.1e-95 354.8 262 63.4
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 1.1e-86 325.9 308 60.1
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 7.1e-83 313.2 319 51.1
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 2.1e-74 285.0 218 71.6
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 2.3e-73 281.6 169 81.1
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 9.0e-70 269.6 209 66.0
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 3.4e-69 267.7 187 74.3
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 8.2e-63 246.5 155 80.0
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 1.8e-62 245.4 198 70.2
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 6.9e-54 216.9 260 48.5
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.7e-52 212.2 109 90.8
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.9e-51 208.8 120 85.0
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 3.6e-50 204.5 122 81.1
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 5.5e-43 180.6 96 88.5
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 6.1e-42 177.2 120 70.8
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 6.5e-36 157.1 110 71.8
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 1.5e-35 156.0 110 71.8
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 5.4e-30 137.5 110 63.6
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 7.2e-27 127.1 76 82.9
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 7.2e-27 127.1 120 61.7
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.2e-24 119.8 141 51.1
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 1.2e-24 119.8 176 44.9
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 5.9e-21 107.5 76 69.7
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 3.8e-20 104.8 101 58.4
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 3.3e-19 101.7 92 58.7
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 3.6e-18 98.2 387 24.8
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 1.0e-17 96.7 80 61.2
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.4e-17 96.3 505 24.2
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 1.8e-17 95.9 110 55.5
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 2.0e-16 92.4 55 81.8
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 2.0e-16 92.4 453 23.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.7e-15 89.4 451 22.8
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 2.2e-15 89.0 119 42.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.9e-15 88.6 448 23.4
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 3.7e-15 88.2 87 56.3
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 2.4e-14 85.5 43 90.7
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 3.2e-14 85.1 132 46.2
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 2.0e-13 82.4 351 25.6
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 5.9e-13 80.9 401 23.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.7e-12 79.3 389 23.4
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.9e-11 75.9 353 23.8
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 1.9e-11 75.9 222 25.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.5e-11 75.5 177 31.6
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.5e-11 75.5 353 23.2
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 4.3e-11 74.7 52 69.2
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 1.0e-09 70.1 218 26.1
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.0e-09 70.1 198 27.3
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 4.0e-09 68.2 222 24.3
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 5.2e-09 67.8 357 23.2
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 6.8e-09 67.4 181 28.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 8.9e-09 67.0 179 28.5
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.5e-08 66.2 51 66.7
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.5e-08 66.2 179 30.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.0e-08 65.9 500 21.8
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 3.4e-08 65.1 115 40.9
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 9.8e-08 63.5 493 22.1
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.7e-07 62.8 358 22.1
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 4.9e-07 61.2 179 27.4
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 5.4e-06 57.8 85 42.4


User provided reference genes

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