Gene: Solyc01g096900.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g096900.3
  • Transcript Identifier Solyc01g096900.3.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 80146864-80167657 : positive

Gene Family Information

  • ID HOM05D005108
  • #Genes/#Species 147/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g096900.3.1
  • uniprot A0A3Q7EN27
  • gene_id Solyc01g096900

Descriptions

  • Description DNA gyrase subunit A (AHRD V3.3 *** A0A2U1Q6G1_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006259
IEA
GOA DatabaseDNA metabolic process
GO:0006259
IEA
InterProDNA metabolic process
GO:0006265
IBA
IEA
GOA DatabaseDNA topological change
GO:0006265
IEA
InterProDNA topological change

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034335
ISO
PLAZA Integrative OrthologyDNA negative supercoiling activity AT3G10690
GO:0005524
IBA
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003677
IBA
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003918
IBA
IEA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003918
IEA
InterProDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003916
IEA
GOA DatabaseDNA topoisomerase activity
GO:0003916
IEA
InterProDNA topoisomerase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016853
IEA
GOA Databaseisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042644
ISO
PLAZA Integrative Orthologychloroplast nucleoid AT3G10690
GO:0016592
ISO
PLAZA Integrative Orthologymediator complex AT3G10690
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G10690
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G10690
GO:0005737
IBA
GOA Databasecytoplasm
GO:0009330
IBA
GOA DatabaseDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
GO:0005694
IEA
GOA Databasechromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal
IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat
IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal
IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR013760 DNA topoisomerase, type IIA-like domain superfamily
IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily
Mapman id Description
13.5.3.1 Cell cycle organisation.organellar DNA replication.DNA gyrase complex.subunit A