Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 3.3e-248 861.3 450 100.0
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.5e-242 841.3 450 97.8
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 6.9e-230 800.4 451 93.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.5e-229 799.3 422 98.8
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.5e-211 738.8 441 88.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 9.7e-208 726.9 413 92.3
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 5.4e-198 694.5 463 78.4
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.0e-196 690.3 454 79.5
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.6e-194 682.9 449 81.1
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.0e-193 680.2 451 78.7
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.0e-192 676.0 453 78.8
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.4e-192 674.9 455 79.8
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.7e-191 672.9 455 78.2
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.8e-191 672.2 454 79.3
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 3.7e-191 671.8 453 79.5
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 8.3e-191 670.6 457 79.0
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.8e-190 669.5 456 78.7
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 4.1e-190 668.3 452 77.7
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 7.0e-190 667.5 455 77.6
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.3e-188 663.3 451 76.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.9e-188 662.1 450 76.4
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 6.6e-188 661.0 455 76.9
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.1e-187 660.2 452 77.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 1.5e-187 659.8 453 77.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.5e-187 659.8 461 77.0
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.6e-186 656.4 453 77.9
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.0e-185 651.7 455 75.8
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 5.2e-185 651.4 453 77.9
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.0e-184 649.4 490 72.4
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.4e-184 648.7 452 75.4
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 5.8e-184 647.9 461 76.4
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.3e-183 646.7 453 76.8
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.7e-183 646.4 452 76.1
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 4.1e-182 641.7 451 74.9
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 9.2e-182 640.6 452 75.4
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 5.0e-180 634.8 455 74.1
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.6e-180 634.4 450 74.9
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-179 633.3 454 73.8
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 5.6e-179 631.3 450 75.3
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 7.3e-179 630.9 448 76.1
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.2e-178 630.2 459 75.6
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 4.7e-178 628.2 450 75.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 8.9e-177 624.0 419 79.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.5e-176 620.9 370 89.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.2e-175 619.4 453 73.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.9e-175 619.0 453 75.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 8.3e-175 617.5 455 74.3
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.4e-174 616.7 451 73.4
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.1e-174 615.1 451 73.4
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 5.4e-174 614.8 454 72.0
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.1e-171 607.1 452 71.9
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.1e-171 607.1 450 72.4
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.5e-171 606.7 449 71.9
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 4.3e-171 605.1 450 72.7
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 7.3e-171 604.4 451 72.9
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.6e-170 603.2 452 72.6
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.6e-170 603.2 448 73.0
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.1e-170 602.8 452 72.1
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 2.8e-170 602.4 452 71.9
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.1e-169 600.5 455 72.7
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 5.2e-169 598.2 453 71.3
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 6.8e-169 597.8 429 75.1
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.2e-168 597.0 452 71.5
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.3e-167 593.6 463 70.4
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 2.4e-166 589.3 449 69.3
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.2e-166 589.0 462 70.3
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 3.2e-166 589.0 449 71.7
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.6e-165 586.6 443 73.4
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.6e-165 586.6 443 73.4
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 7.8e-165 584.3 448 71.2
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.7e-164 583.2 450 70.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 8.6e-164 580.9 453 70.2
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 8.6e-164 580.9 453 69.8
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-163 580.1 411 74.7
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.9e-163 579.7 452 68.1
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 9.5e-163 577.4 454 69.4
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 9.5e-163 577.4 453 68.2
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.2e-162 577.0 450 69.6
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.6e-162 576.6 454 69.6
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.6e-162 576.6 450 70.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.6e-162 576.6 466 68.0
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 8.1e-162 574.3 454 70.3
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.4e-161 573.5 452 70.8
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.4e-161 573.5 454 70.0
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 1.4e-161 573.5 454 69.8
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.4e-161 572.8 467 68.3
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.4e-161 572.8 455 69.0
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-161 572.8 449 69.5
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.4e-161 572.8 454 69.2
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 4.0e-161 572.0 504 64.5
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 5.2e-161 571.6 393 75.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-160 570.5 450 68.7
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.6e-160 569.3 454 69.2
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.4e-160 568.9 450 68.7
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 7.6e-160 567.8 450 68.4
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-159 567.0 458 68.8
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-159 566.2 453 68.2
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.8e-159 565.5 450 67.8
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 9.2e-158 560.8 450 69.6
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 2.1e-157 559.7 453 68.2
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.3e-156 557.0 456 67.5
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 6.6e-156 554.7 452 66.8
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.9e-155 553.1 454 67.0
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.9e-155 553.1 471 65.0
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 4.3e-155 552.0 454 66.7
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 5.6e-155 551.6 457 68.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.2e-154 550.4 454 67.8
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 6.2e-154 548.1 454 67.2
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 4.0e-153 545.4 479 64.5
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.2e-152 543.9 450 66.0
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.3e-151 540.4 450 64.9
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 4.6e-149 531.9 451 66.3
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 7.8e-149 531.2 414 69.1
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.1e-141 506.5 425 65.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 7.9e-141 504.6 424 65.1
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 8.7e-140 501.1 392 68.6
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.8e-138 496.1 412 66.5
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.9e-134 483.4 467 58.0
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 9.3e-134 481.1 396 65.9
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.5e-131 473.0 506 55.1
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 9.6e-131 471.1 479 57.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.6e-125 453.8 453 59.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.0e-124 451.1 424 60.8
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.5e-119 431.4 504 48.6
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 8.5e-119 431.4 340 67.6
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 5.5e-118 428.7 475 51.4
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.9e-116 422.5 341 66.3
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 7.9e-109 398.3 448 53.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.8e-108 394.8 499 46.3
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 4.2e-102 375.9 462 51.5
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 7.2e-94 348.6 399 52.4
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 8.0e-93 345.1 244 70.1
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.6e-91 340.1 486 45.7
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.8e-89 334.0 338 57.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.8e-82 310.1 551 39.2
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 5.9e-80 302.4 373 51.2
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 5.7e-75 285.8 519 37.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.4e-73 279.3 367 45.0
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.6e-61 241.1 251 59.8
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-57 227.3 174 65.5
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 5.4e-57 226.1 128 84.4
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.3e-55 220.7 401 37.7
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-53 214.9 178 61.2
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.8e-53 213.8 179 60.9
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 4.9e-50 203.0 172 60.5
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-49 201.4 264 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.3e-47 194.1 385 36.9
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 9.6e-46 188.7 253 47.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 2.6e-43 180.6 264 40.5
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 3.4e-35 153.7 134 69.4
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 3.2e-33 147.1 141 51.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.6e-32 144.8 351 32.2
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-31 142.1 119 59.7
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.4e-28 131.0 131 61.1
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 3.1e-28 130.6 228 42.1
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.9e-26 124.0 158 51.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.1e-25 122.1 138 55.1
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 3.5e-24 117.1 92 60.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 5.1e-23 113.2 83 72.3
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 8.7e-23 112.5 172 41.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.4e-20 105.1 169 47.3
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.0e-15 89.0 321 26.8
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.8e-15 88.2 200 35.5
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.8e-15 88.2 99 46.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 6.7e-15 86.3 54 77.8
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 7.4e-14 82.8 120 50.8
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 3.2e-09 67.4 43 79.1
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 4.6e-08 63.5 42 78.6
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.1e-08 63.2 109 36.7
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 2.3e-07 61.2 175 30.9
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 5.1e-07 60.1 40 77.5
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-06 58.9 32 90.6
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 7.4e-06 56.2 50 58.0


User provided reference genes

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