Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 0.0e+00 1286.2 672 100.0
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 0.0e+00 1125.5 669 87.3
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 3.3e-276 954.9 673 74.6
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.2e-273 946.4 504 98.6
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.6e-254 881.3 576 78.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 3.2e-231 805.4 702 61.1
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 9.1e-226 787.3 703 60.3
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 9.4e-223 777.3 697 58.4
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 6.7e-221 771.2 717 57.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 4.4e-220 768.5 686 60.3
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 9.7e-220 767.3 700 58.9
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 2.2e-219 766.1 695 59.0
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.8e-218 763.1 698 59.7
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 5.9e-217 758.1 680 59.1
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 2.9e-216 755.7 706 59.5
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 6.5e-216 754.6 708 59.3
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 5.5e-215 751.5 703 57.8
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.6e-214 750.0 695 57.3
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 2.1e-214 749.6 672 58.8
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 3.6e-214 748.8 701 58.3
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 2.3e-213 746.1 716 57.1
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.2e-212 743.8 692 57.5
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 9.7e-212 740.7 672 57.1
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.1e-210 737.3 678 57.1
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 1.8e-210 736.5 703 57.8
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 5.3e-210 734.9 673 58.4
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 9.1e-210 734.2 698 56.3
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.7e-208 729.9 673 57.9
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 2.2e-208 729.6 675 57.6
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.6e-206 723.4 698 56.6
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.0e-205 720.7 678 58.1
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.3e-205 719.5 696 56.8
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 9.8e-204 714.1 707 57.7
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.7e-203 713.4 720 55.3
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-202 709.5 691 57.2
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.1e-202 709.1 696 55.5
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.5e-199 700.3 681 56.5
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 9.5e-199 697.6 692 54.8
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.2e-198 697.2 739 52.8
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.1e-198 696.4 695 55.1
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 8.8e-197 691.0 691 53.5
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.6e-196 689.5 697 56.1
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.4e-196 689.1 758 51.6
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.2e-195 686.4 678 56.6
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.8e-195 686.0 696 56.0
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 6.3e-195 684.9 839 50.8
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 7.0e-194 681.4 690 53.3
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 2.7e-193 679.5 700 53.9
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 3.8e-192 675.6 697 53.4
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.8e-192 675.6 703 54.2
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.0e-192 675.2 688 53.6
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 2.5e-191 672.9 663 55.8
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.3e-191 672.5 690 53.0
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.2e-190 670.6 695 52.7
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.2e-190 670.6 695 53.2
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.8e-190 669.5 695 53.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 4.7e-190 668.7 686 55.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 4.7e-190 668.7 620 57.6
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 8.0e-190 667.9 695 52.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.0e-189 667.5 725 53.5
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 4.4e-188 662.1 680 54.4
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 5.7e-188 661.8 694 52.6
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 7.5e-188 661.4 686 52.8
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 7.5e-188 661.4 686 52.8
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 7.5e-188 661.4 686 52.8
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 1.2e-185 654.1 694 53.0
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 4.6e-185 652.1 641 55.4
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 6.2e-182 641.7 693 51.8
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 3.7e-179 632.5 675 53.5
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 4.0e-173 612.5 678 51.8
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.2e-173 612.1 638 53.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.5e-172 610.5 680 51.0
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.4e-170 603.2 686 49.3
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 4.6e-169 599.0 616 53.7
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 2.3e-168 596.7 684 50.3
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.4e-165 587.4 677 51.1
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 9.2e-162 574.7 678 50.6
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.1e-161 573.5 632 53.2
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 9.6e-159 564.7 675 48.3
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 3.1e-157 559.7 673 48.6
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 1.2e-156 557.8 681 48.3
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 4.9e-155 552.4 678 48.4
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 1.9e-154 550.4 557 56.9
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.3e-150 537.7 651 48.1
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.4e-149 533.5 675 47.4
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 5.3e-149 532.3 689 47.2
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.7e-147 527.3 675 46.8
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.7e-147 527.3 549 54.3
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.2e-147 526.9 679 45.7
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.1e-146 524.6 592 51.5
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.3e-142 511.1 506 54.3
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-141 506.9 581 50.8
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.9e-139 500.0 504 51.8
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 5.0e-123 446.0 686 40.1
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 9.7e-119 431.8 749 38.7
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.4e-117 427.9 601 45.4
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.1e-117 426.8 680 39.7
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 9.1e-117 425.2 478 50.8
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.7e-115 421.0 565 45.1
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 8.5e-115 418.7 662 42.0
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.1e-114 418.3 683 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.8e-110 403.7 678 36.3
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 9.7e-95 352.1 467 43.5
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 6.1e-89 332.8 220 73.6
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.2e-88 329.7 169 98.8
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.2e-87 328.6 527 42.5
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.3e-86 325.1 220 73.2
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 2.1e-81 307.8 663 34.4
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 6.1e-81 306.2 470 46.4
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 8.9e-80 302.4 910 28.6
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 2.3e-72 277.7 162 84.6
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 3.4e-71 273.9 439 41.7
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.9e-70 270.8 221 64.7
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.1e-56 224.2 170 64.7
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.3e-54 218.8 335 44.5
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 8.6e-51 206.1 135 76.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.3e-50 204.1 146 71.2
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 2.1e-49 201.4 166 65.1
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.9e-46 191.0 197 55.3
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.1e-45 186.4 152 65.1
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 9.2e-45 186.0 174 54.0
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.9e-43 180.6 378 34.7
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 3.9e-43 180.6 193 50.3
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 8.1e-41 172.9 143 62.2
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 5.8e-39 166.8 177 54.8
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 5.4e-37 160.2 125 64.8
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 4.3e-34 150.6 101 69.3
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 7.3e-34 149.8 146 54.8
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 7.3e-34 149.8 140 55.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.3e-33 149.1 651 25.7
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 8.4e-30 136.3 281 33.1
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 7.1e-29 133.3 142 51.4
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.6e-25 122.1 167 46.1
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 2.8e-25 121.3 251 33.5
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 6.2e-25 120.2 153 47.7
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-21 109.0 102 57.8
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.5e-21 107.1 91 60.4
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 5.5e-21 107.1 54 96.3
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 3.3e-18 97.8 172 35.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 7.4e-18 96.7 286 29.7
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 6.2e-17 93.6 142 38.7
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.8e-16 92.0 55 76.4
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.2e-14 85.1 67 61.2
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 8.4e-14 83.2 55 65.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 7.9e-12 76.6 78 50.0
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 3.1e-08 64.7 42 71.4
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 3.1e-08 64.7 82 45.1


User provided reference genes

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