Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 5.1e-265 917.1 454 100.0
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.3e-263 912.5 454 99.6
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.6e-258 895.6 454 97.1
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 7.7e-237 823.5 454 89.0
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 3.5e-229 798.1 436 90.1
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.4e-214 749.6 435 86.4
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 3.3e-203 711.8 459 75.8
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 3.6e-202 708.4 457 75.5
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 9.9e-200 700.3 458 75.5
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 8.6e-196 687.2 436 76.4
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.5e-195 686.4 455 72.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 2.5e-195 685.6 459 73.0
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 3.3e-195 685.3 454 72.9
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 4.3e-195 684.9 459 72.5
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.7e-194 681.4 454 72.2
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.2e-194 681.0 454 72.5
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.4e-193 679.1 454 71.8
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 4.0e-193 678.3 459 73.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 1.5e-192 676.4 454 72.5
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 2.0e-192 676.0 458 72.1
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 2.6e-192 675.6 455 73.0
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.4e-192 675.2 454 72.0
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 4.4e-192 674.9 458 72.7
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 9.9e-192 673.7 455 72.3
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.7e-191 672.9 455 73.0
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 6.4e-191 671.0 437 73.9
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 8.4e-191 670.6 458 71.6
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 7.1e-190 667.5 459 72.3
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.6e-189 666.4 455 71.9
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.1e-189 666.0 455 71.9
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 2.1e-189 666.0 458 71.6
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 7.8e-189 664.1 455 71.6
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.0e-188 663.7 454 71.6
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.0e-188 662.1 455 72.3
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.1e-187 660.2 455 70.5
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.2e-186 656.8 451 71.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 2.8e-186 655.6 460 68.9
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 1.8e-185 652.9 458 70.1
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 3.1e-185 652.1 455 70.1
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 3.1e-185 652.1 460 69.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.1e-185 652.1 418 76.8
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 5.2e-185 651.4 439 71.5
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.7e-183 646.4 455 71.4
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 1.7e-183 646.4 455 69.7
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 2.9e-183 645.6 455 70.3
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 2.9e-183 645.6 463 71.1
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 3.8e-183 645.2 442 73.1
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 3.8e-183 645.2 516 63.2
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 2.4e-182 642.5 458 69.4
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 3.2e-182 642.1 454 69.6
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 3.2e-182 642.1 490 66.3
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 5.4e-182 641.3 455 69.2
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 6.0e-181 637.9 454 70.3
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.3e-180 636.7 455 69.2
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.3e-180 636.0 444 71.2
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 2.3e-180 636.0 454 69.4
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.1e-179 633.6 456 69.1
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 3.3e-179 632.1 455 69.5
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 5.6e-179 631.3 453 68.2
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 5.6e-179 631.3 459 69.3
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 9.6e-179 630.6 458 67.9
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.6e-178 629.8 460 69.6
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 4.8e-178 628.2 458 67.7
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.1e-177 627.1 455 68.4
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 3.1e-177 625.5 455 68.8
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 4.0e-177 625.2 459 67.1
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 2.6e-176 622.5 458 66.6
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 4.5e-176 621.7 413 73.4
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 5.8e-176 621.3 454 67.8
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 2.9e-175 619.0 457 68.9
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 1.9e-174 616.3 456 68.6
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 3.2e-174 615.5 458 67.0
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 4.2e-174 615.1 457 67.0
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 5.4e-174 614.8 457 68.5
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.0e-172 610.5 454 67.6
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 9.6e-171 604.0 456 67.3
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.1e-170 602.8 455 67.5
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 2.0e-168 596.3 405 73.3
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 3.4e-168 595.5 459 65.4
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 4.5e-168 595.1 456 66.0
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 5.8e-168 594.7 457 66.1
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 9.9e-168 594.0 409 70.2
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 4.9e-167 591.7 460 66.1
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 6.4e-167 591.3 456 65.8
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.4e-166 590.1 456 65.6
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.9e-166 589.7 458 62.2
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 3.2e-166 589.0 456 62.7
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 3.0e-164 582.4 456 63.2
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 6.7e-164 581.3 488 63.3
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 2.5e-163 579.3 456 66.2
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 3.3e-163 578.9 385 73.2
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 3.3e-163 578.9 455 63.7
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 4.8e-162 575.1 383 74.7
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 5.5e-158 561.6 457 63.9
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.2e-157 560.5 407 67.6
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.4e-140 503.8 372 66.9
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 2.0e-131 473.4 465 50.1
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 4.4e-131 472.2 458 50.9
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.7e-127 460.3 371 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 3.1e-121 439.5 459 49.2
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.5e-118 430.6 455 47.0
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.1e-117 426.8 464 53.4
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.8e-116 423.7 340 64.7
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 6.3e-114 415.2 299 68.6
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.4e-105 385.6 314 64.6
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.3e-102 375.2 379 52.2
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 7.3e-102 375.2 514 40.7
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 4.9e-90 335.9 462 40.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 4.7e-77 292.7 197 66.5
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 9.9e-75 285.0 244 63.9
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 4.7e-69 266.2 444 36.9
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 3.8e-66 256.5 191 65.4
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 8.4e-66 255.4 224 56.2
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.1e-38 165.2 295 34.2
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 9.7e-38 162.2 457 28.4
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.4e-36 158.3 105 71.4
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.5e-17 94.4 124 34.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 5.0e-10 70.1 319 22.6
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 3.2e-09 67.4 339 23.9
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 4.2e-09 67.0 310 23.2
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 5.5e-09 66.6 318 22.3
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 9.4e-09 65.9 336 24.1
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 6.1e-08 63.2 358 21.5
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 8.0e-08 62.8 114 28.9
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 8.0e-08 62.8 114 28.9
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.3e-07 61.2 132 28.0
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.3e-07 61.2 132 28.0
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.0e-07 60.8 114 28.1
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 4.0e-07 60.5 114 27.2
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 5.2e-07 60.1 114 26.3
Cpa.g.c29144.2 Carica papaya HOM05D000836 ORTHO05D000709 6.8e-07 59.7 314 21.3
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 6.8e-07 59.7 214 23.4
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 8.8e-07 59.3 196 26.5
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 8.8e-07 59.3 192 23.4
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 8.8e-07 59.3 123 26.0
TWI36G1526 Tripterygium wilfordii HOM05D000684 ORTHO05D000688 2.0e-06 58.2 152 25.0
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 2.6e-06 57.8 114 25.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 4.4e-06 57.0 174 25.9
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 5.7e-06 56.6 230 23.9
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 5.7e-06 56.6 230 24.3
Cfa023960 Carpinus fangiana HOM05D006430 ORTHO05D007585 5.7e-06 56.6 185 25.9
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 5.7e-06 56.6 131 26.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 5.7e-06 56.6 118 26.3
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 5.7e-06 56.6 128 27.3
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 7.5e-06 56.2 230 23.9
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 7.5e-06 56.2 129 25.6
PSO541G1463 Papaver somniferum HOM05D000684 ORTHO05D000688 7.5e-06 56.2 126 28.6
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 9.7e-06 55.8 201 23.9
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 9.7e-06 55.8 229 23.1
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 9.7e-06 55.8 194 21.1
Lalb_Chr17g0347231 Lupinus albus HOM05D000684 ORTHO05D000688 9.7e-06 55.8 126 27.8
PSO675G4498 Papaver somniferum HOM05D000684 ORTHO05D000688 9.7e-06 55.8 126 28.6
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 9.7e-06 55.8 230 25.2


User provided reference genes

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