Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g062650.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-44 181.4 84 100.0
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-24 116.3 87 69.0
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-24 116.3 87 69.0
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-24 116.3 87 69.0
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-24 116.3 87 69.0
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-24 116.3 87 69.0
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 5.6e-24 114.0 87 67.8
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 1.2e-23 112.8 87 66.7
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 2.8e-23 111.7 87 65.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 2.8e-23 111.7 87 65.5
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 3.6e-23 111.3 87 65.5
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 2.3e-22 108.6 87 64.4
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.1e-22 108.2 83 65.1
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-22 108.2 87 63.2
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-22 108.2 87 63.2
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-22 108.2 87 63.2
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-22 108.2 87 63.2
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 3.1e-22 108.2 87 63.2
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 3.1e-22 108.2 87 65.5
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 4.0e-22 107.8 81 67.9
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.9e-22 106.7 81 66.7
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.2e-21 106.3 81 65.4
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.2e-21 106.3 87 62.1
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.2e-21 106.3 81 66.7
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.5e-21 105.9 87 63.2
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.5e-21 105.9 87 63.2
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.5e-21 105.9 87 63.2
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.5e-21 105.9 88 60.2
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.5e-21 105.9 81 65.4
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 2.0e-21 105.5 81 66.7
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 2.6e-21 105.1 81 64.2
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 2.6e-21 105.1 81 64.2
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 2.6e-21 105.1 81 64.2
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 2.6e-21 105.1 81 65.4
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.4e-21 104.8 87 60.9
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 3.4e-21 104.8 81 65.4
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 3.4e-21 104.8 81 67.9
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 4.4e-21 104.4 87 62.1
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 4.4e-21 104.4 81 65.4
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 5.8e-21 104.0 87 63.2
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 7.5e-21 103.6 81 66.7
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 9.9e-21 103.2 81 65.4
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 9.9e-21 103.2 81 65.4
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 9.9e-21 103.2 87 62.1
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.3e-20 102.8 81 65.4
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.3e-20 102.8 81 65.4
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.3e-20 102.8 81 65.4
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.3e-20 102.8 81 65.4
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.7e-20 102.4 86 60.5
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.7e-20 102.4 81 66.7
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.7e-20 102.4 87 59.8
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 2.2e-20 102.1 87 60.9
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.2e-20 102.1 84 60.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.2e-20 102.1 87 60.9
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 2.2e-20 102.1 87 60.9
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 4.9e-20 100.9 81 60.5
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 4.9e-20 100.9 81 63.0
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 6.4e-20 100.5 81 63.0
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 8.3e-20 100.1 81 63.0
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 8.3e-20 100.1 81 63.0
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.3e-20 100.1 81 61.7
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 8.3e-20 100.1 63 74.6
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.4e-19 99.4 88 58.0
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 2.4e-19 98.6 81 61.7
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-19 98.6 80 63.8
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 3.2e-19 98.2 80 60.0
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 3.2e-19 98.2 80 60.0
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 3.2e-19 98.2 80 60.0
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 3.2e-19 98.2 80 60.0
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 3.2e-19 98.2 80 60.0
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.6e-18 95.9 80 60.0
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 1.6e-18 95.9 82 58.5
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 3.5e-18 94.7 87 57.5
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.0e-17 93.2 87 56.3
Oeu012802.1 Olea europaea HOM05D000216 ORTHO05D000634 1.5e-16 89.4 81 60.5
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 3.3e-16 88.2 77 62.3
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 7.3e-16 87.0 79 58.2
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 7.3e-16 87.0 81 56.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 9.5e-16 86.7 72 63.9
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 1.2e-15 86.3 74 62.2
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.6e-15 85.9 73 60.3
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-14 83.2 80 53.8
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.4e-14 82.0 69 62.3
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 4.0e-14 81.3 69 62.3
Migut.D01414 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.2e-13 79.7 82 52.4
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.0e-13 79.0 53 69.8
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 7.6e-13 77.0 84 47.6
CAN.G1265.2 Capsicum annuum HOM05D000216 ORTHO05D000634 1.7e-12 75.9 51 66.7
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.7e-12 75.9 53 67.9
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 4.9e-12 74.3 67 56.7
Solyc07g021290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.1e-11 70.5 55 63.6
Solyc04g018250.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.2e-11 70.1 54 64.8
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 2.1e-10 68.9 44 75.0
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.7e-10 68.6 42 78.6
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.7e-10 68.6 42 78.6
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.0e-10 67.4 60 58.3
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.0e-09 65.1 42 76.2
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 3.0e-09 65.1 62 50.0
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.1e-08 63.2 36 83.3
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 1.5e-08 62.8 52 61.5
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.3e-08 61.2 36 77.8
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.3e-08 61.2 36 77.8
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 5.6e-08 60.8 63 50.8
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-07 58.5 27 85.2
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 8.1e-07 57.0 51 52.9
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.1e-07 57.0 27 81.5
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.4e-06 56.2 27 77.8
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-06 56.2 27 85.2


User provided reference genes

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