Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 3.2e-119 431.8 221 100.0
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 5.4e-111 404.4 214 97.2
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 5.1e-85 318.2 215 74.9
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 6.5e-72 274.6 210 69.0
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.9e-71 273.1 272 57.7
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 2.7e-70 269.2 190 72.1
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 5.9e-49 198.4 108 97.2
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.5e-44 183.7 209 50.2
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 9.2e-42 174.5 183 48.6
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 9.2e-42 174.5 170 51.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.3e-40 170.6 225 42.7
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.9e-40 169.5 163 48.5
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.9e-39 166.8 194 47.9
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.3e-39 165.6 183 45.4
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 5.2e-37 158.7 199 44.7
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 5.7e-36 155.2 187 50.8
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.7e-35 153.7 196 43.9
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.1e-34 151.0 218 44.0
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.0e-33 146.7 167 41.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.5e-31 140.6 219 39.7
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.0e-29 134.4 252 36.1
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 8.9e-29 131.3 197 38.6
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 5.8e-28 128.6 190 40.0
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 4.9e-27 125.6 120 50.0
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.4e-26 123.2 199 36.7
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 1.0e-24 117.9 138 46.4
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.6e-24 115.2 249 34.9
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 5.6e-23 112.1 175 40.6
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.6e-22 110.5 156 41.0
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.8e-22 109.8 170 40.6
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.7e-22 109.0 189 38.6
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 3.1e-21 106.3 163 41.7
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 4.0e-21 105.9 157 35.7
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.2e-21 105.5 164 39.6
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.4e-20 102.8 179 36.9
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 4.4e-20 102.4 159 37.1
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 5.8e-20 102.1 186 38.7
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 9.8e-20 101.3 179 37.4
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 9.8e-20 101.3 168 35.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.7e-19 100.5 161 39.1
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-19 100.5 161 39.1
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.7e-19 100.5 199 36.7
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.7e-19 100.5 199 36.7
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 2.2e-19 100.1 164 39.6
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.4e-19 98.6 161 40.4
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.4e-18 97.4 198 33.8
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.2e-18 96.3 165 34.5
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 3.2e-18 96.3 157 39.5
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.1e-18 95.9 158 37.3
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 9.2e-18 94.7 188 34.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.6e-17 94.0 167 40.1
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 3.5e-17 92.8 158 39.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 3.5e-17 92.8 164 36.0
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 4.6e-17 92.4 151 36.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 6.0e-17 92.0 146 37.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 7.8e-17 91.7 162 35.8
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 7.8e-17 91.7 162 37.7
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.7e-16 90.5 204 29.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.3e-16 90.1 146 37.0
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-16 90.1 164 36.6
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.9e-16 89.4 155 34.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.9e-16 89.4 167 35.3
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 6.6e-16 88.6 146 37.0
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 4.3e-15 85.9 155 34.2
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 5.6e-15 85.5 155 36.1
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.6e-15 85.5 176 34.7
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 7.3e-15 85.1 57 61.4
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 9.5e-15 84.7 157 35.7
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.2e-14 84.3 146 35.6
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.2e-14 84.3 146 35.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.6e-14 84.0 162 34.0
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.6e-14 84.0 174 32.2
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.8e-14 83.2 146 35.6
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.8e-14 83.2 188 34.0
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 3.6e-14 82.8 146 34.9
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 8.1e-14 81.6 153 34.6
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 8.1e-14 81.6 146 34.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 8.1e-14 81.6 164 31.7
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.1e-13 81.3 146 34.9
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-13 81.3 152 34.2
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.1e-13 81.3 152 34.2
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.4e-13 80.9 153 32.7
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.8e-13 80.5 163 33.7
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 5.8e-12 75.5 125 40.0
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.4e-11 71.6 84 39.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.9e-10 70.5 84 39.3
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 9.2e-10 68.2 148 33.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 9.2e-10 68.2 148 33.8
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-09 67.8 69 46.4
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 1.6e-09 67.4 148 33.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.0e-08 64.7 45 60.0
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 2.3e-08 63.5 61 52.5
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 5.1e-08 62.4 205 25.4
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 8.6e-08 61.6 46 54.3
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.5e-07 60.8 47 55.3
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.5e-07 60.8 61 44.3
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.5e-07 60.1 55 50.9
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.5e-07 60.1 55 50.9
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.5e-07 60.1 50 58.0
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.5e-07 60.1 134 33.6
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 4.3e-07 59.3 150 31.3
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.2e-06 57.8 86 32.6
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.2e-06 57.8 45 53.3
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.2e-06 57.8 51 52.9
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.6e-06 57.4 163 30.7
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 2.1e-06 57.0 146 34.2
arahy.Tifrunner.gnm1.ann1.CMRI1Q Arachis hypogaea HOM05D042872 ORTHO05D012325 2.8e-06 56.6 97 37.1
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.8e-06 56.6 142 31.7
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 2.8e-06 56.6 53 50.9
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.6e-06 56.2 46 47.8
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 3.6e-06 56.2 155 31.0
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.6e-06 56.2 49 46.9
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 8.1e-06 55.1 58 41.4
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 8.1e-06 55.1 54 55.6
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 8.1e-06 55.1 50 46.0


User provided reference genes

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