Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 0.0e+00 1308.5 653 100.0
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 0.0e+00 1281.2 653 98.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 0.0e+00 1247.6 653 95.3
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.3e-306 1055.0 663 82.8
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 5.6e-289 997.3 692 73.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.4e-284 982.6 665 78.3
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 5.4e-284 980.7 665 78.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-270 936.0 695 68.6
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.8e-270 934.1 695 68.6
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.9e-184 649.4 703 51.1
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 8.6e-181 637.9 695 51.1
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 8.9e-178 627.9 681 53.2
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 2.0e-177 626.7 717 50.6
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.2e-176 623.2 667 51.6
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-174 617.5 671 51.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.1e-174 616.7 672 51.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.1e-172 610.9 700 49.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 8.1e-171 604.7 659 51.6
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.4e-170 604.0 661 49.3
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.8e-170 603.6 648 52.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.6e-169 599.7 709 48.7
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.7e-168 597.0 727 47.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.4e-167 594.0 660 49.4
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 9.3e-167 591.3 657 50.5
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 9.3e-167 591.3 705 46.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.2e-166 590.9 725 46.5
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 7.8e-166 588.2 714 48.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.7e-165 584.7 705 46.8
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.6e-164 582.0 714 47.8
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 7.3e-164 581.6 667 48.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 6.2e-163 578.6 717 47.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.4e-162 577.4 720 46.8
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.0e-161 573.5 720 47.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 7.6e-161 571.6 696 48.1
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.4e-160 568.2 713 47.5
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.1e-159 567.8 699 46.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.4e-159 566.6 712 46.2
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.5e-158 562.8 723 46.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.0e-157 561.2 693 46.5
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 5.1e-157 558.9 670 47.8
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 8.7e-157 558.1 706 44.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.8e-155 553.1 714 47.1
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.7e-155 552.7 715 47.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 8.1e-155 551.6 848 40.4
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.1e-154 551.2 708 47.2
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.4e-154 550.1 705 46.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.3e-154 548.9 706 46.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.5e-153 547.4 732 45.4
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.4e-153 546.2 668 47.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 4.5e-153 545.8 730 45.1
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.3e-152 544.3 704 46.3
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.7e-152 543.9 704 46.3
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 8.4e-152 541.6 704 46.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 8.4e-152 541.6 710 45.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 5.5e-151 538.9 709 43.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.5e-151 538.9 704 46.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 5.5e-151 538.9 706 45.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 2.3e-149 533.5 724 43.5
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.9e-149 532.7 693 44.3
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.9e-148 530.4 706 44.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.9e-148 530.4 661 47.7
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-146 524.6 678 45.4
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 6.5e-144 515.4 724 43.4
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-143 513.5 724 43.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.2e-143 513.1 724 43.4
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.2e-142 511.1 699 42.8
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.1e-142 510.4 718 43.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.0e-141 508.1 703 45.0
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.0e-141 508.1 669 44.1
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.3e-140 503.1 672 43.9
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.3e-140 502.7 581 48.2
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.4e-140 501.9 664 42.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.2e-137 494.6 608 46.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.0e-137 493.8 680 45.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.4e-137 493.0 657 44.7
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 2.2e-136 490.3 653 45.0
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.1e-135 488.0 685 43.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.5e-135 485.7 701 42.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.4e-133 481.1 695 43.7
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.2e-131 473.8 404 59.4
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 6.3e-131 472.2 698 42.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.3e-128 464.5 406 56.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.2e-127 459.9 638 41.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 2.1e-126 457.2 670 42.1
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 3.6e-126 456.4 709 42.2
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 8.8e-125 451.8 710 41.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.6e-124 450.3 738 40.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.7e-123 446.4 699 41.1
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.1e-122 443.4 674 41.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.0e-121 440.7 539 49.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 3.5e-121 439.9 535 49.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.5e-121 439.5 690 40.3
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.0e-120 438.3 483 52.4
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.2e-119 433.3 669 43.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.2e-119 433.3 682 41.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 5.5e-119 432.6 671 42.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 9.4e-119 431.8 670 42.8
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.4e-117 427.9 669 42.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.5e-116 424.5 685 40.1
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 2.0e-116 424.1 666 43.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 8.2e-115 418.7 531 45.8
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.4e-114 417.2 675 40.9
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.8e-112 409.8 667 40.2
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.2e-111 406.4 631 41.5
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.7e-110 402.9 641 40.4
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.4e-109 401.4 630 41.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.8e-109 401.0 685 38.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.2e-104 384.0 566 42.2
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.4e-98 364.8 656 36.0
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.6e-97 361.3 519 43.0
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.3e-96 358.2 716 34.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 6.6e-96 355.9 461 45.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 4.7e-94 349.7 660 36.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.1e-90 336.7 178 93.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.0e-88 329.7 372 50.8
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.2e-86 325.1 703 33.0
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.7e-83 313.5 297 56.6
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.4e-82 310.8 399 45.6
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.1e-77 293.9 482 40.9
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 6.8e-77 292.7 369 44.2
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.9e-71 274.6 684 31.1
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.9e-68 262.3 620 33.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-63 247.7 394 40.4
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.5e-60 238.4 467 38.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 8.4e-59 232.6 364 41.5
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 8.4e-59 232.6 704 30.4
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 4.2e-58 230.3 802 27.7
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.8e-54 217.6 803 24.5
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.2e-52 212.2 352 39.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-42 179.1 229 45.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 3.2e-42 177.6 140 60.0
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 7.4e-39 166.4 163 60.1
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.0e-37 160.6 256 35.9
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-36 156.8 762 22.2
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.9e-35 154.5 240 40.4
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.5e-34 151.4 245 38.0
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.7e-32 143.3 464 28.0
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-31 142.5 198 39.9
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.2e-27 128.3 194 38.7
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.9e-27 127.9 425 28.9
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.8e-24 118.6 99 57.6
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.5e-23 115.5 99 57.6
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.3e-22 112.5 151 41.1
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-21 109.4 299 31.8
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.1e-18 99.4 203 30.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.3e-15 87.4 112 43.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.3e-15 87.4 144 38.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-14 85.9 367 24.8
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.3e-13 80.5 298 25.5
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.1e-10 72.8 233 30.5
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.6e-09 68.9 189 29.6
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.6e-09 67.8 56 57.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.0e-08 66.2 63 49.2
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.3e-08 65.1 397 20.9
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.0e-08 64.7 65 53.8
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.1e-07 62.8 129 34.9
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 1.1e-07 62.8 66 48.5
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.5e-07 62.4 181 32.0
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 7.4e-07 60.1 66 48.5
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.8e-06 58.2 117 33.3


User provided reference genes

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